RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 DEFB127Q9H1M4 99 aa11.72□□□□□ -0.53
CLCN3-210ENST00000515420 TP63Q9H3D4 680 aaPredicted RBP11.72□□□□□ -0.53
CLCN3-210ENST00000515420 NTMQ9P121 344 aa11.72□□□□□ -0.53
CLCN3-210ENST00000515420 MAPRE3Q9UPY8 281 aa11.72□□□□□ -0.53
CLCN3-210ENST00000515420 MEMO1Q9Y316 297 aa11.72□□□□□ -0.53
CLCN3-210ENST00000515420 PHF3Q92576 2039 aaKnown RBP11.72□□□□□ -0.53
CLCN3-210ENST00000515420 FREM3P0C091 2139 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ATP6AP2A0A1C7CYW4 349 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 AKAP10O43572 662 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ATP6AP2O75787 350 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 CLDN1O95832 211 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 PRPS1L1P21108 318 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 BGNP21810 368 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 KRT20P35900 424 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 PNLIPRP2P54317 469 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 PSG6Q00889 435 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 EMX2Q04743 252 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ZNF155Q12901 538 aaPredicted RBP11.71□□□□□ -0.53
CLCN3-210ENST00000515420 STX3Q13277 289 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 EFR3AQ14156 821 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 CASP8Q14790 479 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ZNHIT3Q15649 155 aaPredicted RBP11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ZNF385BQ569K4 471 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 XKRXQ6PP77 449 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 TMEM107Q6UX40 140 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 NPSR1Q6W5P4 371 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 CD163Q86VB7 1156 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 LIX1Q8N485 282 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 RNF138Q8WVD3 245 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ITLN2Q8WWU7 325 aaPredicted RBP11.71□□□□□ -0.53
CLCN3-210ENST00000515420 TMBIM1Q969X1 311 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 DTNBP1Q96EV8 351 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 COL21A1Q96P44 957 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 DMRTA2Q96SC8 542 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 LMF2Q9BU23 707 aaKnown RBP11.71□□□□□ -0.53
CLCN3-210ENST00000515420 OSBPL11Q9BXB4 747 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 C20orf27Q9GZN8 174 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 UBQLN3Q9H347 655 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 METTL7AQ9H8H3 244 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ANKRA2Q9H9E1 313 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 ATAD3AQ9NVI7 634 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 NOP53Q9NZM5 478 aaKnown RBP11.71□□□□□ -0.53
CLCN3-210ENST00000515420 SH3BP4Q9P0V3 963 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 BAIAP2L1Q9UHR4 511 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 SH3BGRL2Q9UJC5 107 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 EIF3LQ9Y262 564 aaKnown RBP11.71□□□□□ -0.53
CLCN3-210ENST00000515420 PCDHGB3Q9Y5G1 929 aa11.71□□□□□ -0.53
CLCN3-210ENST00000515420 PRAMEF25A6NGN4 478 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 TSPAN2O60636 221 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 UGT2B11O75310 529 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 REM1O75628 298 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 LRATO95237 230 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 TPOP07202 933 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 RFPL3SP0C7P2 107 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 IL12BP29460 328 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 MASP1P48740 699 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 MAN2A2P49641 1150 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 SMSP52788 366 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 MANFP55145 182 aaKnown RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 WDR4P57081 412 aaKnown RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 CORO7P57737 925 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 MAGOHP61326 146 aaKnown RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 BST1Q10588 318 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 HSPB3Q12988 150 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 ART3Q13508 389 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 VPS26BQ4G0F5 336 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 AGBL2Q5U5Z8 902 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 FNDC7Q5VTL7 733 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 IL23RQ5VWK5 629 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 BICRALQ6AI39 1079 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 ZNF551Q7Z340 670 aaPredicted RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 CAMKMTQ7Z624 323 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 SLC44A2Q8IWA5 706 aaPredicted RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 TRIM42Q8IWZ5 723 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 ANKRD42Q8N9B4 389 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 CEP70Q8NHQ1 597 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 CLHC1Q8NHS4 586 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 HOXB13Q92826 284 aaPredicted RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 CIDECQ96AQ7 238 aaPredicted RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 SARAFQ96BY9 339 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 PRPF18Q99633 342 aaKnown RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 LDAHQ9H6V9 325 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 C3orf14Q9HBI5 128 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 Q9N2J8 555 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 NKIRAS1Q9NYS0 192 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 MRTO4Q9UKD2 239 aaKnown RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 C15orf41Q9Y2V0 281 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 OR10H1Q9Y4A9 318 aa11.7□□□□□ -0.54
CLCN3-210ENST00000515420 KLF2Q9Y5W3 355 aaPredicted RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 UTP20O75691 2785 aaKnown RBP11.7□□□□□ -0.54
CLCN3-210ENST00000515420 TRGV5A0A0B4J1U4 118 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 FIGNL2A6NMB9 653 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 ADAM10O14672 748 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 SNPHO15079 494 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 ICOSLGO75144 302 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 SNNO75324 88 aaPredicted RBP11.69□□□□□ -0.54
CLCN3-210ENST00000515420 PDE9AO76083 593 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 HPNP05981 417 aa11.69□□□□□ -0.54
CLCN3-210ENST00000515420 HOXD4P09016 255 aaPredicted RBP11.69□□□□□ -0.54
CLCN3-210ENST00000515420 CELA3AP09093 270 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms