RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 C3P1Q6ZMU1 363 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 RGS9BPQ6ZS82 235 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 LARP4Q71RC2 724 aaKnown RBP eCLIP12.81□□□□□ -0.36
DDX41-212ENST00000511040 NUP54Q7Z3B4 507 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 WDR75Q8IWA0 830 aaKnown RBP12.81□□□□□ -0.36
DDX41-212ENST00000511040 KIRREL3Q8IZU9 778 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 FAM109AQ8N4B1 249 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 FBXO30Q8TB52 745 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 RAB3IL1Q8TBN0 382 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 ZNF75CPQ92670 426 aaPredicted RBP12.81□□□□□ -0.36
DDX41-212ENST00000511040 EFHD2Q96C19 240 aaPredicted RBP12.81□□□□□ -0.36
DDX41-212ENST00000511040 COL21A1Q96P44 957 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 ANGPTL4Q9BY76 406 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 WDR55Q9H6Y2 383 aaPredicted RBP12.81□□□□□ -0.36
DDX41-212ENST00000511040 ZDHHC11Q9H8X9 412 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 VIPAS39Q9H9C1 493 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 GALNT9Q9HCQ5 603 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 ZFP64Q9NPA5 681 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 ACSS1Q9NUB1 689 aaPredicted RBP12.81□□□□□ -0.36
DDX41-212ENST00000511040 ZNF835Q9Y2P0 537 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 SNX8Q9Y5X2 465 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 COL12A1Q99715 3063 aa12.81□□□□□ -0.36
DDX41-212ENST00000511040 NCKAP5O14513 1909 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 A0A1W2PRB8 838 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 GXYLT2A0PJZ3 443 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 GNB5O14775 395 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 HDAC3O15379 428 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 TSPAN2O60636 221 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 ZG16O60844 167 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 TRIM3O75382 744 aaPredicted RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 C6orf47O95873 294 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 DDX5P17844 614 aaKnown RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 IL12BP29460 328 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 GABRA3P34903 492 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 PTGS2P35354 604 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 KRT20P35900 424 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 RFX3P48380 749 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 NME5P56597 212 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 CLDN8P56748 225 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 PSG6Q00889 435 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 GAB1Q13480 694 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 SLC10A1Q14973 349 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 HYAL4Q2M3T9 481 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.8□□□□□ -0.36
DDX41-212ENST00000511040 TBCELQ5QJ74 424 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 TMEM198Q66K66 360 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 ANGPTL8Q6UXH0 198 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 BNC2Q6ZN30 1099 aaPredicted RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 NCCRP1Q6ZVX7 275 aaPredicted RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 RIMKLAQ8IXN7 391 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 NUP43Q8NFH3 380 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 RELTQ969Z4 430 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 COQ8BQ96D53 544 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 OTUB1Q96FW1 271 aaPredicted RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 ZNF597Q96LX8 424 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 PSMG3-AS1Q96PY0 264 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 SECISBP2Q96T21 854 aaKnown RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 PRPF18Q99633 342 aaKnown RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 YIPF4Q9BSR8 244 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 LDAHQ9H6V9 325 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 ZNF703Q9H7S9 590 aaPredicted RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 SIRT3Q9NTG7 399 aaPredicted RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 RYDENQ9NUL5 291 aaKnown RBP12.8□□□□□ -0.36
DDX41-212ENST00000511040 ASIC5Q9NY37 505 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 KLRF1Q9NZS2 232 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 FLRT3Q9NZU0 649 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 TNFRSF10DQ9UBN6 386 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 MYO7BQ6PIF6 2116 aa12.8□□□□□ -0.36
DDX41-212ENST00000511040 USP9XQ93008 2570 aaPredicted RBP12.79□□□□□ -0.36
DDX41-212ENST00000511040 GTF3C1Q12789 2109 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 ZNF407Q9C0G0 2248 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 ANKRD33BA6NCL7 494 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 PRAMEF25A6NGN4 478 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 OR6C70A6NIJ9 312 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 HMGB1P1B2RPK0 211 aaPredicted RBP12.79□□□□□ -0.36
DDX41-212ENST00000511040 CFLARO15519 480 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 EMC8O43402 210 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 TRAPPC6AO75865 159 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 SNX4O95219 450 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 TPOP07202 933 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 ALDOCP09972 364 aaKnown RBP12.79□□□□□ -0.36
DDX41-212ENST00000511040 GDF1P27539 372 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 EPHA3P29320 983 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 PTGDSP41222 190 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 TRPC1P48995 793 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 PER3P56645 1201 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 TOMM20Q15388 145 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 ZNHIT3Q15649 155 aaPredicted RBP12.79□□□□□ -0.36
DDX41-212ENST00000511040 SMU1Q2TAY7 513 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 FNDC7Q5VTL7 733 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 NXNQ6DKJ4 435 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 Q6ZPB1 254 aaPredicted RBP12.79□□□□□ -0.36
DDX41-212ENST00000511040 TRILQ7L0X0 811 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 MAVSQ7Z434 540 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 CD163Q86VB7 1156 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 PACS2Q86VP3 889 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 DOLPP1Q86YN1 238 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 GPR151Q8TDV0 419 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 OR5P2Q8WZ92 322 aa12.79□□□□□ -0.36
DDX41-212ENST00000511040 PIK3R3Q92569 461 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms