RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 YARS2Q9Y2Z4 477 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KCNE3Q9Y6H6 103 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DNMT3AQ9Y6K1 912 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FRYLO94915 3013 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TTC28Q96AY4 2481 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LRRTM2O43300 516 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ASGR2P07307 311 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ALPPL2P10696 532 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 IL7P13232 177 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 POU3F3P20264 500 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 AZGP1P25311 298 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PPP2R1BP30154 601 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KHKP50053 298 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRKAG1P54619 331 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HYAL2Q12891 473 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZIC1Q15915 447 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C3orf38Q5JPI3 329 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LINC00471Q8N535 108 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR9Q1Q8NGQ5 310 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR2A1Q8NGT9 310 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SUN3Q8TAQ9 357 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 INSM2Q96T92 566 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MACROD1Q9BQ69 325 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRR14Q9BWN1 585 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLC7A5P2Q9GIP4 190 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 XKR8Q9H6D3 395 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 EGLN3Q9H6Z9 239 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FGF20Q9NP95 211 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLC9A8Q9Y2E8 581 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SF3B6Q9Y3B4 125 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GRIP1Q9Y3R0 1128 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PGRMC2O15173 223 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 IL1AP01583 271 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CHRM5P08912 532 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLC35G4P0C7Q5 338 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ACADMP11310 421 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 IL12RB1P42701 662 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TAS2R38P59533 333 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRDX1Q06830 199 aaKnown RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR2G6Q5TZ20 316 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RSBN1Q5VWQ0 802 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C22orf42Q6IC83 251 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMEM64Q6YI46 380 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ADCK2Q7Z695 626 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MRGPREQ86SM8 312 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMEM203Q969S6 136 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ASB16Q96NS5 453 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FERD3LQ96RJ6 166 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 QRSL1Q9H0R6 528 aaKnown RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ABCB9Q9NP78 766 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TIGARQ9NQ88 270 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRSS16Q9NQE7 514 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ASB4Q9Y574 426 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SPIN1Q9Y657 262 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 A0A087WUU8 490 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 A0A1W2PS29 197 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 APOL3O95236 402 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CRYZL1O95825 349 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 BCL6P41182 706 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RUNX1T1Q06455 604 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LASP1Q14847 261 aaKnown RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SNAPC1Q16533 368 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZNF544Q6NX49 715 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR8D4Q8NGM9 314 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ANGPTL6Q8NI99 470 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMEM163Q8TC26 289 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TP53INP1Q96A56 240 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CNRIP1Q96F85 164 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C16orf58Q96GQ5 468 aa15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TP63Q9H3D4 680 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MBNL1Q9NR56 388 aaKnown RBP15.11■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SNRNP200O75643 2136 aaKnown RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQ09 198 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 A0A1W2PR48 441 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 STK25O00506 426 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NTN1O95631 604 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HMGN2P05204 90 aaKnown RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ACP2P11117 423 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HOXB3P14651 431 aaPredicted RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DRD3P35462 400 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 BUD31P41223 144 aaPredicted RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SMSP52788 366 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 WNT4P56705 351 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 COPZ1P61923 177 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RPS25P62851 125 aaKnown RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HNRNPA0Q13151 305 aaKnown RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KLHL22Q53GT1 634 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ATAD3CQ5T2N8 411 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MRM1Q6IN84 353 aaKnown RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRICKLE2Q7Z3G6 844 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CLDN22Q8N7P3 220 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MAFAQ8NHW3 353 aaPredicted RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CAPSLQ8WWF8 208 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HLA-CQ95604 372 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RAB7BQ96AH8 199 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 BBS4Q96RK4 519 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SPATA5L1Q9BVQ7 753 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SAP130Q9H0E3 1048 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 POLMQ9NP87 494 aaPredicted RBP15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRDM7Q9NQW5 492 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms