RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FOLH1BQ9HBA9 442 aa7.84□□□□□ -1.15
USP54-215ENST00000497106 MAT2BQ9NZL9 334 aa7.84□□□□□ -1.15
USP54-215ENST00000497106 PIKFYVEQ9Y2I7 2098 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 IGHV5-51A0A0C4DH38 117 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SHISA7A6NL88 538 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SCN2BO60939 215 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ABCB7O75027 752 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 RFPL3O75679 317 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 CDC123O75794 336 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 THBS1P07996 1170 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SMIM10L1P0DMW3 83 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ATP6V1E1P36543 226 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ZFP36L2P47974 494 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 XKR5Q6UX68 686 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 MSRB3Q8IXL7 192 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 MARVELD2Q8N4S9 558 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SMIM10Q96HG1 83 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 UCK2Q9BZX2 261 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 BTBD3Q9Y2F9 522 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 C2orf92A0A1B0GVN3 265 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 PAICSP22234 425 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 NR1H2P55055 460 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 COX10Q12887 443 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SQSTM1Q13501 440 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 FXNQ16595 210 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 NKAIN1Q4KMZ8 207 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 OR2L13Q8N349 312 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 CNRIP1Q96F85 164 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 CCNL2Q96S94 520 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 TREX2Q9BQ50 279 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 TESQ9UGI8 421 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 CBLCQ9ULV8 474 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ERVK-19Q9WJR5 959 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 HEMK1Q9Y5R4 338 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 SPIN1Q9Y657 262 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 FAM86C2PA6NEL3 165 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 FGF17O60258 216 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 OR5F1O95221 314 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 PDGFBP01127 241 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 RBMS1P29558 406 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 KCNJ5P48544 419 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 GPR143P51810 404 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 YBX1P67809 324 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 SRSF5Q13243 272 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 ZIK1Q3SY52 487 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 GPR141Q7Z602 305 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 MISPQ8IVT2 679 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SLC25A45Q8N413 288 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 TMEM102Q8N9M5 508 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 ZFAND2BQ8WV99 257 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 IPCEF1Q8WWN9 437 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 CDS1Q92903 461 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 DEFB126Q9BYW3 111 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 TEKT2Q9UIF3 430 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ZNF443Q9Y2A4 671 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 FITM1A5D6W6 292 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ACOX3O15254 700 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 PPM1BO75688 479 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 HMGN1P05114 100 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 PABPC4LP0CB38 370 aaKnown RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 ICAM2P13598 275 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 FBXW4P57775 412 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 SFT2D3Q587I9 215 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ZNF248Q8NDW4 579 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 TSPAN14Q8NG11 270 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 TMEM234Q8WY98 164 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 HSPBAP1Q96EW2 488 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 ZNF597Q96LX8 424 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 OR10A5Q9H207 317 aa7.83□□□□□ -1.16
USP54-215ENST00000497106 TUBA8Q9NY65 449 aaPredicted RBP7.83□□□□□ -1.16
USP54-215ENST00000497106 TRAPPC13A5PLN9 417 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 A8MVJ9 347 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 HMGN4O00479 90 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 B4GAT1O43505 415 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 MSL3P1P0C860 447 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 OR1D4P47884 311 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 LGALS3BPQ08380 585 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 C6orf52Q5T4I8 152 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 RHBDD2Q6NTF9 364 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 PTOV1Q86YD1 416 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 C1orf216Q8TAB5 229 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 WARS2Q9UGM6 360 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 MED31Q9Y3C7 131 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 D6RAR5 112 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ALOX12BO75342 701 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 RCBTB2O95199 551 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 OR6A2O95222 327 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ITPKBP27987 946 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 DCTP40126 519 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 MAT1AQ00266 395 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 C1DQ13901 141 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 SYT16Q17RD7 645 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 COX20Q5RI15 118 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 STX19Q8N4C7 294 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 VMP1Q96GC9 406 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 MPP4Q96JB8 637 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ZNF717Q9BY31 904 aaPredicted RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 YIPF3Q9GZM5 350 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 CSTAP01040 98 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 PGCP20142 388 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms