RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PSIP1O75475 530 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 H6PDO95479 791 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 TFP02787 698 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 MMP3P08254 477 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 RPS17P08708 135 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PSKH1P11801 424 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 MYL6BP14649 208 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 CBR1P16152 277 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 AMD1P17707 334 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 HSD11B1P28845 292 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 TPMTP51580 245 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 GPR143P51810 404 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF75DP51815 510 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 RAD23BP54727 409 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SPCS3P61009 180 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 CDK16Q00536 496 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PAX5Q02548 391 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 TRAF2Q12933 501 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 VAMP3Q15836 100 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PPP1R3AQ16821 1122 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SBK1Q52WX2 424 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 LYSMD4Q5XG99 296 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 TIGD3Q6B0B8 471 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM109BQ6ICB4 259 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 OR5M10Q6IEU7 315 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC39A4Q6P5W5 647 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PARM1Q6UWI2 310 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 CLEC18BQ6UXF7 455 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ASCL4Q6XD76 172 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PID1Q7Z2X4 250 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SFR1Q86XK3 245 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 STHQ8IWL8 128 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 NAGSQ8N159 534 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 FBXL16Q8N461 479 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 TEX26Q8N6G2 289 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 CLEC18CQ8NCF0 446 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 OR4D6Q8NGJ1 314 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 OR4C15Q8NGM1 316 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ST8SIA1Q92185 356 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 HSD17B8Q92506 261 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PIGCQ92535 297 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 GTF2H4Q92759 462 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC38A4Q969I6 547 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF419Q96HQ0 510 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 PPP1R16AQ96I34 528 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 C9orf72Q96LT7 481 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 RANBP9Q96S59 729 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 RASL10BQ96S79 203 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 MYADMQ96S97 322 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 FEVQ99581 238 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 CPNE1Q99829 537 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 HDHD5Q9BXW7 423 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 WWTR1Q9GZV5 400 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC38A1Q9H2H9 487 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 MTHFD2LQ9H903 347 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 MAP6D1Q9H9H5 199 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SPAG4Q9NPE6 437 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SAMSN1Q9NSI8 373 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF639Q9UID6 485 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 DAPK2Q9UIK4 370 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 NPTNQ9Y639 398 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ARHGEF40Q8TER5 1519 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 A0A1B0GW15 77 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ESYT2A0FGR8 921 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CXorf65A6NEN9 183 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 P2RY10O00398 339 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 FLRT2O43155 660 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 PIGRP01833 764 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 HIST1H2ABP04908 130 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 PROS1P07225 676 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 RAB40ALP0C0E4 278 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 DANCRP0C864 163 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 OCMP0CE72 109 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 B4GALT1P15291 398 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF26P17031 533 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 HIST1H2ADP20671 130 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CYP3A5P20815 502 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 MMP12P39900 470 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CAPZBP47756 277 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 DSCR9P59020 149 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CXCR4P61073 352 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 VSNL1P62760 191 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 POLR2LP62875 67 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CCZ1BP86790 482 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 CCZ1P86791 482 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 SORDQ00796 357 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ITGADQ13349 1161 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 SNTA1Q13424 505 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ITIH4Q14624 930 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 FASTKD3Q14CZ7 662 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TRIP10Q15642 601 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 TSC22D1Q15714 1073 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM189A2Q15884 450 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 HIST2H2ACQ16777 129 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 IZUMO4Q1ZYL8 232 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 C5orf64Q2M2E5 130 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF691Q5VV52 312 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 IL23RQ5VWK5 629 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 LIPNQ5VXI9 398 aa4.42□□□□□ -1.7
CCDC88A-210ENST00000468534 H3F3CQ6NXT2 135 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms