RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TMEM168Q9H0V1 697 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 PDLIM7Q9NR12 457 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 VDAC3Q9Y277 283 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 OXSR1O95747 527 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 SFRP4Q6FHJ7 346 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 KATNBL1Q9H079 304 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 LDB3O75112 727 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 SNNO75324 88 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 GKN3PP0CG01 181 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 PRDX3P30048 256 aaKnown RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 TRAM1Q15629 374 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 PIANPQ8IYJ0 282 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 RNF215Q9Y6U7 377 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 A8MVJ9 347 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 H0YJX3 145 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 SLC1A7O00341 560 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 OPN1LWP04000 364 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 ACTA2P62736 377 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 ACTG2P63267 376 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 GALNT6Q8NCL4 622 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF420Q8TAQ5 688 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 NEIL2Q969S2 332 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 NECAB3Q96P71 396 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 RNF38Q9H0F5 515 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 MTHFD2LQ9H903 347 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 AK1P00568 194 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 MTNR1AP48039 350 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 SOX9P48436 509 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 BCL2L15Q5TBC7 163 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 ASRGL1Q7L266 308 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 MAMDC2Q7Z304 686 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-209ENST00000438120 OR7G3Q8NG95 312 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 MFSD8Q8NHS3 518 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 DDIT4LQ96D03 193 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 MAN2C1Q9NTJ4 1040 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 STUB1Q9UNE7 303 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 H7C417 338 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 LSSP48449 732 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 POU4F2Q12837 409 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 HES5Q5TA89 166 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 TCEAL8Q8IYN2 117 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 SYT4Q9H2B2 425 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 KLHL21Q9UJP4 597 aa16.29■□□□□ 0.2
PTPRF-209ENST00000438120 PRAMEF2O60811 474 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 GJA5P36382 358 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 HYAL4Q2M3T9 481 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 RLN3Q8WXF3 142 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 TCEAL3Q969E4 200 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 CASD1Q96PB1 797 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 RBM24Q9BX46 236 aaKnown RBP16.28■□□□□ 0.2
PTPRF-209ENST00000438120 BRINP1O60477 761 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 NCS1P62166 190 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 FBXO46Q6PJ61 603 aaPredicted RBP16.28■□□□□ 0.2
PTPRF-209ENST00000438120 FBXO27Q8NI29 283 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 TRMT10AQ8TBZ6 339 aaKnown RBP16.28■□□□□ 0.2
PTPRF-209ENST00000438120 MAGIXQ9H6Y5 334 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 C2orf42Q9NWW7 574 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 ACTR10Q9NZ32 417 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 PRSS21Q9Y6M0 314 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 A0A1B0GV50 99 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 C17orf105B2RV13 164 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 RP2O75695 350 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 SCML4Q8N228 414 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 SCGB1C1Q8TD33 95 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 NMNAT1Q9HAN9 279 aaPredicted RBP16.28■□□□□ 0.2
PTPRF-209ENST00000438120 IL17CQ9P0M4 197 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 HRGP04196 525 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 ENDOUP21128 410 aaKnown RBP16.28■□□□□ 0.2
PTPRF-209ENST00000438120 SLC2A5P22732 501 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 GSTM2P28161 218 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 MAP2K3P46734 347 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 HOXC5Q00444 222 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 CYS1Q717R9 158 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 SLC6A11P48066 632 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 CASP6P55212 293 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 RAB15P59190 212 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 GNMTQ14749 295 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 IL17RCQ8NAC3 791 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 HINT2Q9BX68 163 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 USP36Q9P275 1121 aaKnown RBP16.28■□□□□ 0.2
PTPRF-209ENST00000438120 PCDHGA7Q9Y5G6 932 aa16.28■□□□□ 0.2
PTPRF-209ENST00000438120 F5H0A9 414 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-209ENST00000438120 FBXO45P0C2W1 286 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF43P17038 809 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 UBE2NP61088 152 aaKnown RBP16.27■□□□□ 0.2
PTPRF-209ENST00000438120 SQSTM1Q13501 440 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 SLC18B1Q6NT16 456 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 METTL2BQ6P1Q9 378 aaKnown RBP16.27■□□□□ 0.2
PTPRF-209ENST00000438120 MTFR2Q6P444 385 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 LIX1LQ8IVB5 337 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 UEVLDQ8IX04 471 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 ELMOD2Q8IZ81 293 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 ACVR1CQ8NER5 493 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 FUNDC2Q9BWH2 189 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 TRAPPC13A5PLN9 417 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 SYPP08247 313 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 MAGEA3P43357 314 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 SUOXP51687 545 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 RSU1Q15404 277 aa16.27■□□□□ 0.2
PTPRF-209ENST00000438120 CTC1Q2NKJ3 1217 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms