RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ZNF726A6NNF4 738 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 ARPC2O15144 300 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 ANXA2P07355 339 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 BMP1P13497 986 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 ACVR2AP27037 513 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 EIF2S3P41091 472 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 OR7A17O14581 309 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 TAPBPO15533 448 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 CLCN2P51788 898 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 TARDBPQ13148 414 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 AKAP14Q86UN6 197 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 METTL4Q8N3J2 472 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 TNFAIP8L1Q8WVP5 186 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 NKX1-2Q9UD57 310 aaPredicted RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 CDC40O60508 579 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 SNX4O95219 450 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 GSK3BP49841 420 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 PER3P56645 1201 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 FER1L6-AS2Q96M78 137 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 RBM4BQ9BQ04 359 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 RBM4Q9BWF3 364 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 ASPNQ9BXN1 380 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 SNTG1Q9NSN8 517 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 PCDHGA5Q9Y5G8 931 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 CSO75390 466 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 ROR2Q01974 943 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 RABL3Q5HYI8 236 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 SVOPLQ8N434 492 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 L3MBTL4Q8NA19 623 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 OR14A16Q8NHC5 309 aa12.19□□□□□ -0.46
PTCH1-207ENST00000429896 WDR77Q9BQA1 342 aaPredicted RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 WDR83Q9BRX9 315 aaKnown RBP12.19□□□□□ -0.46
PTCH1-207ENST00000429896 FAM240BA0A1B0GVZ2 78 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 TNFSF15O95150 251 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 AHSA1O95433 338 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 PDGFBP01127 241 aaPredicted RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 BLOC1S3Q6QNY0 202 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 HSDL2Q6YN16 418 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 USP36Q9P275 1121 aaKnown RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 DPPA5A6NC42 116 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 PPP6CO00743 305 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 TNFRSF17Q02223 184 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 GPBAR1Q8TDU6 330 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 CIDECQ96AQ7 238 aaPredicted RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 B3GAT2Q9NPZ5 323 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 ERVK-19Q9WJR5 959 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 IL33O95760 270 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 GPR75O95800 540 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 SDC1P18827 310 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 FAUP35544 74 aaKnown RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 TRIP6Q15654 476 aaKnown RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 FIGNL1Q6PIW4 674 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 CLECL1Q8IZS7 167 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 ISL2Q96A47 359 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 MAPKAP1Q9BPZ7 522 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 COMMD4Q9H0A8 199 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 FSCN3Q9NQT6 498 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 C8orf4Q9NR00 106 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 SPHK1Q9NYA1 384 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 POMPQ9Y244 141 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 CCDC187A0A096LP49 1063 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 NUDT21O43809 227 aaKnown RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 CPMP14384 443 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 RPS26P62854 115 aaKnown RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 B4GALNT1Q00973 533 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 SCN1BQ07699 218 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 ST3GAL3Q11203 375 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 SPIN3Q5JUX0 258 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 PMS2CLQ68D20 193 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 FAM180BQ6P0A1 224 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 NAXDQ8IW45 347 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 ENDOVQ8N8Q3 282 aaKnown RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 CDRT4Q8N9R6 151 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 NT5DC2Q9H857 520 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 ZNF224Q9NZL3 707 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 NOX1Q9Y5S8 564 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 RGS10O43665 173 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 CH25HO95992 272 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 PGCP20142 388 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 TTKP33981 857 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 MC3RP41968 323 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 SYT16Q17RD7 645 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 TMEM207Q6UWW9 146 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 THAP5Q7Z6K1 395 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 LSMEM2Q8N112 164 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 BAHD1Q8TBE0 780 aaPredicted RBP12.18□□□□□ -0.46
PTCH1-207ENST00000429896 ZPBPQ9BS86 351 aa12.18□□□□□ -0.46
PTCH1-207ENST00000429896 C5orf51A6NDU8 294 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 CREG1O75629 220 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 ZFAND5O76080 213 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 SP9P0CG40 484 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 EFR3AQ14156 821 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 ABI3BPQ7Z7G0 1075 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 RNF175Q8N4F7 328 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 ASB9Q96DX5 294 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 LOXL4Q96JB6 756 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 HSH2DQ96JZ2 352 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 MS4A8Q9BY19 250 aa12.17□□□□□ -0.46
PTCH1-207ENST00000429896 GPN1Q9HCN4 374 aaPredicted RBP12.17□□□□□ -0.46
PTCH1-207ENST00000429896 CCDC163A0A0D9SF12 145 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms