RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TBC1D24Q9ULP9 559 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 C2CD4DB7Z1M9 353 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 KIAA0513O60268 411 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CTSOP43234 321 aaPredicted RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 PGFP49763 221 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 SGSHP51688 502 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 ELOCQ15369 112 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CDNFQ49AH0 187 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 MLIPQ5VWP3 458 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 BLOC1S3Q6QNY0 202 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 GALNT5Q7Z7M9 940 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 PAQR7Q86WK9 346 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 ENTHD1Q8IYW4 607 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 RDH10Q8IZV5 341 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TSPEARQ8WU66 669 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 ZNF778Q96MU6 729 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 OR2M4Q96R27 311 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 LYSMD1Q96S90 227 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 AIF1LQ9BQI0 150 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 ZPBPQ9BS86 351 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 C1QTNF6Q9BXI9 259 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TCF7L1Q9HCS4 588 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 EMC7Q9NPA0 242 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 PRSS16Q9NQE7 514 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 SLC6A5Q9Y345 797 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 DHRS7Q9Y394 339 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 ISM1B1AKI9 464 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 GRID2O43424 1007 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 FZD6O60353 706 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 KERAO60938 352 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TIMP2P16035 220 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CMPK1P30085 196 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 MAT2AP31153 395 aaKnown RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 DHPSP49366 369 aaPredicted RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 ZNF140P52738 457 aaPredicted RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 TMEM115Q12893 351 aaPredicted RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 SYT6Q5T7P8 510 aaPredicted RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 ENPP7Q6UWV6 458 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 DEF8Q6ZN54 512 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CMC1Q7Z7K0 106 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 STOML3Q8TAV4 291 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 GPR151Q8TDV0 419 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 DTD2Q96FN9 168 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 GHRLQ9UBU3 117 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CYP8B1Q9UNU6 501 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TANC1Q9C0D5 1861 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TRBV23OR9-2A0A075B6M9 112 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 TTC24A2A3L6 582 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 OR2AG2A6NM03 316 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 AIPO00170 330 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 TOXO94900 526 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 PAX6P26367 422 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 YPEL5P62699 121 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 MED22Q15528 200 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ARHGAP40Q5TG30 622 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 KANK2Q63ZY3 851 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ETV3LQ6ZN32 361 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CNTN4Q8IWV2 1026 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 A0A1B0GVI7 797 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 TMEM238LA0A1B0GVL6 79 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 FAM234BA2RU67 622 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SPP1P10451 314 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 COX5BP10606 129 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 IGFBP5P24593 272 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CNTN1Q12860 1018 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CBLBQ13191 982 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 HKDC1Q2TB90 917 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 TMEM88Q6PEY1 159 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CLEC2AQ6UVW9 174 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 PARS2Q7L3T8 475 aaKnown RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 LRRC70Q7Z2Q7 622 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ZNF683Q8IZ20 524 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 FSTL5Q8N475 847 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 SLC44A3Q8N4M1 653 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 RHOVQ96L33 236 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 KLHL15Q96M94 604 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 MYOCQ99972 504 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SLC29A3Q9BZD2 475 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 METTL9Q9H1A3 318 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SLC2A6Q9UGQ3 507 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SIT1Q9Y3P8 196 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 MGAT4DA6NG13 374 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 MED6O75586 246 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 TRHRP34981 398 aaPredicted RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 SLC35F1Q5T1Q4 408 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ELP2Q6IA86 826 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 DBX2Q6ZNG2 339 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 GCNT7Q6ZNI0 430 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SHFQ7M4L6 423 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 DNAJB14Q8TBM8 379 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 LRCH3Q96II8 777 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ACOX2Q99424 681 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SORT1Q99523 831 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 CHIAQ9BZP6 476 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ALG2Q9H553 416 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 SMURF2Q9HAU4 748 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 TREX1Q9NSU2 369 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 IMP3Q9NV31 184 aaKnown RBP9.28□□□□□ -0.92
USP54-205ENST00000424265 NPEPPSL1A6NEC2 478 aa9.28□□□□□ -0.92
USP54-205ENST00000424265 ACAA1P09110 424 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms