RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DCAF13Q9NV06 445 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 GIN1Q9NXP7 522 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 OR10H1Q9Y4A9 318 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 AP4S1Q9Y587 144 aa15.94■□□□□ 0.14
CCDC28B-202ENST00000421922 SDK2Q58EX2 2172 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 SAGE2PA6NJ88 616 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 A8MVJ9 347 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 SUV39H1O43463 412 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 NME6O75414 186 aaPredicted RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 SERPINB7O75635 380 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 S1PR1P21453 382 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC7A1P30825 629 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 MAN2A2P49641 1150 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 EEF1A2Q05639 463 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 RPS26P11Q5JNZ5 115 aaPredicted RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 PRAMEF8Q5VWM4 474 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 PRAMEF7Q5VXH5 474 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 PAPD4Q6PIY7 484 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 ZNF517Q6ZMY9 492 aaPredicted RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 CCDC80Q76M96 950 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 ANKFN1Q8N957 763 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 C16orf52Q8NHV5 167 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 CT55Q8WUE5 264 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 CANT1Q8WVQ1 401 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 RASSF5Q8WWW0 418 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC47A1Q96FL8 570 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC35A4Q96G79 324 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 TPD52L3Q96J77 140 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 TRNT1Q96Q11 434 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 LMF2Q9BU23 707 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 OLAHQ9NV23 265 aa15.93■□□□□ 0.14
CCDC28B-202ENST00000421922 PTPRBP23467 1997 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 A0A0G2JPF8 293 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 TCRBV5S2A0A599 114 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 OR6C76A6NM76 312 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 HNRNPCL2B2RXH8 293 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 HNRNPCL3B7ZW38 293 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 RAD1O60671 282 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 PGM3O95394 542 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 H6PDO95479 791 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 HNRNPCL4P0DMR1 293 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 FCGR1AP12314 374 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 SOX18P35713 384 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 EMDP50402 254 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 EFNA3P52797 238 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 ELOAQ14241 798 aaKnown RBP15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 MYBPC3Q14896 1274 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 CYBRD1Q53TN4 286 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 DCST2Q5T1A1 773 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 TMEM205Q6UW68 189 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 FKBP9P1Q75LS8 142 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 EIF3MQ7L2H7 374 aaKnown RBP15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 GALNT10Q86SR1 603 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 ZNF615Q8N8J6 731 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 OR1N1Q8NGS0 311 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 VPS50Q96JG6 964 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 GAL3ST4Q96RP7 486 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 TREX2Q9BQ50 279 aaPredicted RBP15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 BTBD2Q9BX70 525 aa15.92■□□□□ 0.14
CCDC28B-202ENST00000421922 IGHV3-20A0A0C4DH32 117 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 C21orf140B9A014 251 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 PRKD3O94806 890 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 SEC24DO94855 1032 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 NKX2-2O95096 273 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 DDAH2O95865 285 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 OPN1SWP03999 348 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 RAP2AP10114 183 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ANPEPP15144 967 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ATP6V1C1P21283 382 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 RFX3P48380 749 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC37A1P57057 533 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 SESN3P58005 492 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 DCAF7P61962 342 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 DUSP8Q13202 625 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 DNASE1L3Q13609 305 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ARHGAP11BQ3KRB8 267 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 CRB2Q5IJ48 1285 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ENPP6Q6UWR7 440 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 LRRC74BQ6ZQY2 392 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 CBLL1Q75N03 491 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 TMPRSS7Q7RTY8 843 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 TIPARPQ7Z3E1 657 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ARMC8Q8IUR7 673 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ADGRG5Q8IZF4 528 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 B3GNT7Q8NFL0 401 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ZNF721Q8TF20 911 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 PIK3R3Q92569 461 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 DUS3LQ96G46 650 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 RMND5BQ96G75 393 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 PYURFQ96I23 114 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 VSTM2LQ96N03 204 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 COL21A1Q96P44 957 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 ITPAQ9BY32 194 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 MAGIXQ9H6Y5 334 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 CCM2LQ9NUG4 571 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 STX18Q9P2W9 335 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 SEC14L3Q9UDX4 400 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 SLC13A4Q9UKG4 626 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 BAG5Q9UL15 447 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 FARSAQ9Y285 508 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms