RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 USP43Q70EL4 1123 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 SLC46A3Q7Z3Q1 461 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 ZNF554Q86TJ5 538 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 IGFN1Q86VF2 1251 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 KBTBD8Q8NFY9 601 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 OR2L5Q8NG80 312 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 OR52E1Q8NGJ3 308 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 ABTB1Q969K4 478 aaPredicted RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 GTPBP3Q969Y2 492 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 MS4A6EQ96DS6 147 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 ZHX1-C8orf76Q96EF9 292 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 C17orf62Q9BQA9 187 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 APOOQ9BUR5 198 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 OR51I1Q9H343 314 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 GIMAP4Q9NUV9 329 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 LYARQ9NX58 379 aaKnown RBP13.91□□□□□ -0.18
USP4-203ENST00000415188 SEC14L3Q9UDX4 400 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 ENTPD4Q9Y227 616 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 KCNK6Q9Y257 313 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 SLC9A8Q9Y2E8 581 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 GPSM3Q9Y4H4 160 aa13.91□□□□□ -0.18
USP4-203ENST00000415188 ACACAQ13085 2346 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 PDZK1P1A8MUH7 402 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 FFAR1O14842 300 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 CASC3O15234 703 aaKnown RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 AIREO43918 545 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 PIAS2O75928 621 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 GASTP01350 101 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 FUCA1P04066 466 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 SERPIND1P05546 499 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 NR2F1P10589 423 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 ATP5A1P25705 553 aaKnown RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 CLK1P49759 484 aaKnown RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 NCBP2P52298 156 aaKnown RBP eCLIP13.9□□□□□ -0.18
USP4-203ENST00000415188 VBP1P61758 197 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 STXBP1P61764 594 aaKnown RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 CYP27C1Q4G0S4 372 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 TPRG1LQ5T0D9 272 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 TCTN3Q6NUS6 607 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 ABHD17CQ6PCB6 329 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 WASH2PQ6VEQ5 465 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 ZNF793Q6ZN11 406 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 OR2L3Q8NG85 312 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 SUN3Q8TAQ9 357 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 ZNF675Q8TD23 568 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 RAB8BQ92930 207 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 TREX2Q9BQ50 279 aaPredicted RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 FUZQ9BT04 418 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 AICDAQ9GZX7 198 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 SERHL2Q9H4I8 314 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 XKR8Q9H6D3 395 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 SLC6A20Q9NP91 592 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 ZCCHC3Q9NUD5 404 aaKnown RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 GIN1Q9NXP7 522 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 CCDC59Q9P031 241 aaKnown RBP13.9□□□□□ -0.18
USP4-203ENST00000415188 ASB4Q9Y574 426 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 CORINQ9Y5Q5 1042 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 HS3ST3A1Q9Y663 406 aa13.9□□□□□ -0.18
USP4-203ENST00000415188 KNTC1P50748 2209 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 A0A0G2JPF8 293 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 TRBV4-1A0A0J9YWV2 114 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 A0A1W2PRQ8 180 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 HNRNPCL2B2RXH8 293 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 HNRNPCL3B7ZW38 293 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 J3QRK9 145 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 M0R082 166 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 UGT2B17O75795 530 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 RPLP0P05388 317 aaKnown RBP13.89□□□□□ -0.19
USP4-203ENST00000415188 FHP07954 510 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 OCM2P0CE71 109 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 OCMP0CE72 109 aaPredicted RBP13.89□□□□□ -0.19
USP4-203ENST00000415188 GIMD1P0DJR0 217 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 HNRNPCL4P0DMR1 293 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 ADORA3P0DMS8 318 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 OR12D1P0DN82 309 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 MYF5P13349 255 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 GSSP48637 474 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 ST3GAL4Q11206 333 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 COX10Q12887 443 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 HYAL2Q12891 473 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 SLAMF1Q13291 335 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 FZD2Q14332 565 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 TIMM50Q3ZCQ8 353 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 C12orf73Q69YU5 71 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 ZNF425Q6IV72 752 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 TUBA3EQ6PEY2 450 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 CD300LDQ6UXZ3 194 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 PTCHD4Q6ZW05 846 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 CENPSQ8N2Z9 138 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 OR4C6Q8NH72 309 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 OR2M4Q96R27 311 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 NRTNQ99748 197 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 MMP27Q9H306 513 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 PRDM7Q9NQW5 492 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 GPR27Q9NS67 375 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 MS4A12Q9NXJ0 267 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 OR6C2Q9NZP2 312 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 CALML5Q9NZT1 146 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 C5AR2Q9P296 337 aa13.89□□□□□ -0.19
USP4-203ENST00000415188 DKK4Q9UBT3 224 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms