RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KLBQ86Z14 1044 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 GALNT13Q8IUC8 556 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 ANKK1Q8NFD2 765 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 SUSD6Q92537 303 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 NRTNQ99748 197 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 BTBD2Q9BX70 525 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 OR10H1Q9Y4A9 318 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 C1orf196B1AJZ1 125 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 EFCAB14O75071 495 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 FARS2O95363 451 aaKnown RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 WISP3O95389 354 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 ADH1AP07327 375 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CD53P19397 219 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CST5P28325 142 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CTNNB1P35222 781 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 DEFB103AP81534 67 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF91Q05481 1191 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 KIAA0040Q15053 153 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 ALKAL2Q6UX46 152 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 GDPD1Q8N9F7 314 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 TMEM145Q8NBT3 493 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 OR5AR1Q8NGP9 310 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 SECISBP2Q96T21 854 aaKnown RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 FUZQ9BT04 418 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 TTLL2Q9BWV7 592 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 ABCG4Q9H172 646 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 C14orf105Q9NVL8 296 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CCL26Q9Y258 94 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CSNK1G3Q9Y6M4 447 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CCDC88CQ9P219 2028 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CAPN5O15484 640 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 EPHX1P07099 455 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 RHCEP18577 417 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 VIPR1P32241 457 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 KCNJ10P78508 379 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CAP1Q01518 475 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 TEAD2Q15562 447 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 KHDRBS2Q5VWX1 349 aaKnown RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 LIN54Q6MZP7 749 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CCDC71Q8IV32 467 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 C12orf45Q8N5I9 185 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 TMEM175Q9BSA9 504 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CDCP1Q9H5V8 836 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CERS4Q9HA82 394 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 EXTL2Q9UBQ6 330 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CA5BQ9Y2D0 317 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ATG2BQ96BY7 2078 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 PCM1Q15154 2024 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 PLXNB2O15031 1838 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 WASH3PC4AMC7 463 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 SLC22A5O76082 557 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 C1SP09871 688 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 RAB3AP20336 220 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 DRD5P21918 477 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ACVR1BP36896 505 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ANXA11P50995 505 aaKnown RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 FCRLBQ6BAA4 426 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 OR4N5Q8IXE1 308 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 HORMAD2Q8N7B1 307 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 SAMD12Q8N8I0 201 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 RASGEF1AQ8N9B8 481 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 OR8J1Q8NGP2 316 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 OR9A1PQ8NGU1 263 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 RBPMSQ93062 196 aaKnown RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ELMOD3Q96FG2 381 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 QRFPRQ96P65 431 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 EPYCQ99645 322 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 SNX11Q9Y5W9 270 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 H3BNC9 293 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 QSOX1O00391 747 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 REM1O75628 298 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ATG12O94817 140 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 HMGA1P17096 107 aaKnown RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 SYN1P17600 705 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 BAK1Q16611 211 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF311Q5JNZ3 666 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 LRIF1Q5T3J3 769 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 TPGS2Q68CL5 300 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 CDK20Q8IZL9 346 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 PGBD3Q8N328 593 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF655Q8N720 491 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 OR4F15Q8NGB8 312 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 OR51L1Q8NGJ5 315 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 PXYLP1Q8TE99 480 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 GAS2L1Q99501 681 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ACTR6Q9GZN1 396 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 ABCG5Q9H222 651 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 EGLN3Q9H6Z9 239 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 FBXO8Q9NRD0 319 aa11.29□□□□□ -0.6
HMGB1-206ENST00000405805 H7C0S8 307 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 LGALS8O00214 317 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 FABP7O15540 132 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 HPGDSO60760 199 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 LAG3P18627 525 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 PTX3P26022 381 aaPredicted RBP11.28□□□□□ -0.6
HMGB1-206ENST00000405805 IMPA1P29218 277 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 PCGF2P35227 344 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF169Q14929 603 aaPredicted RBP11.28□□□□□ -0.6
HMGB1-206ENST00000405805 AMZ2Q86W34 360 aa11.28□□□□□ -0.6
HMGB1-206ENST00000405805 ANGPTL6Q8NI99 470 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms