RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ZNF582Q96NG8 517 aaPredicted RBP15.22■□□□□ 0.03
PCDH1-203ENST00000394536 CD180Q99467 661 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 CALML5Q9NZT1 146 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 ZNF646O15015 1829 aaPredicted RBP15.22■□□□□ 0.03
PCDH1-203ENST00000394536 I3L521 148 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 PSPHP78330 225 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 ABATP80404 500 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 LSM11P83369 360 aaKnown RBP eCLIP15.22■□□□□ 0.03
PCDH1-203ENST00000394536 DBPQ10586 325 aaPredicted RBP15.22■□□□□ 0.03
PCDH1-203ENST00000394536 C2orf27AQ580R0 203 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 NATD1Q8N6N6 113 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 ACBD7Q8N6N7 88 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 OR2T33Q8NG76 320 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 OR9A2Q8NGT5 310 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 SUN3Q8TAQ9 357 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 MED20Q9H944 212 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 GPATCH2Q9NW75 528 aa15.22■□□□□ 0.03
PCDH1-203ENST00000394536 KHDRBS3O75525 346 aaKnown RBP15.21■□□□□ 0.03
PCDH1-203ENST00000394536 IL1AP01583 271 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 DRD5P21918 477 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 CMPK1P30085 196 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 KCNJ5P48544 419 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 SIM1P81133 766 aaPredicted RBP15.21■□□□□ 0.03
PCDH1-203ENST00000394536 RPL6Q02878 288 aaKnown RBP15.21■□□□□ 0.03
PCDH1-203ENST00000394536 CDKN3Q16667 212 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 DEFB134Q4QY38 66 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 C6orf132Q5T0Z8 1188 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 CCDC190Q86UF4 302 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 RANBP3LQ86VV4 465 aaPredicted RBP15.21■□□□□ 0.03
PCDH1-203ENST00000394536 LINC00471Q8N535 108 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 DPP7Q9UHL4 492 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 A0A075B6Q4 140 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 HYKKA2RU49 373 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 ZSCAN5BA6NJL1 495 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 ERP29P30040 261 aaKnown RBP15.21■□□□□ 0.03
PCDH1-203ENST00000394536 TMEM27Q9HBJ8 222 aa15.21■□□□□ 0.03
PCDH1-203ENST00000394536 NFATC1O95644 943 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 HBQ1P09105 142 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 CERS1P27544 350 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 CCNJQ5T5M9 372 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 LINGO2Q7L985 606 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 GJD3Q8N144 294 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 NANOGP1Q8N7R0 232 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 BEST4Q8NFU0 473 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 SLC7A6Q92536 515 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 TM9SF4Q92544 642 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 TBC1D20Q96BZ9 403 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 NEURL3Q96EH8 262 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 RIPOR3Q96MK2 946 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 OR2A14Q96R47 310 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 SNX18Q96RF0 628 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 DPH1Q9BZG8 443 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 TRIM36Q9NQ86 728 aa15.21■□□□□ 0.02
PCDH1-203ENST00000394536 HIDE1A8MVS5 230 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 SLC35G6P0C7Q6 338 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 GKN3PP0CG01 181 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 MMP12P39900 470 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 CCR2P41597 374 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 OR56A1Q8NGH5 318 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 RFT1Q96AA3 541 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 ZNF717Q9BY31 904 aaPredicted RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 GLIPR2Q9H4G4 154 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 SLC27A6Q9Y2P4 619 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 SPEF1Q9Y4P9 236 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 TDRD15B5MCY1 1934 aaKnown RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 IGLV3-16A0A075B6K0 115 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NPIPA5A0A0B4J1W7 369 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NPIPA7E9PJI5 369 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 TMPRSS11DO60235 418 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 GYPBP06028 91 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NPIPA8P0DM63 369 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 SLC6A11P48066 632 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 STXBP1P61764 594 aaKnown RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 FIGNL1Q6PIW4 674 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 POMZP3Q6PJE2 187 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 ADIPOR2Q86V24 386 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 OOSP2Q86WS3 158 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NDC1Q9BTX1 674 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 PPIL3Q9H2H8 161 aaKnown RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 FZD3Q9NPG1 666 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NUDT15Q9NV35 164 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NDRG2Q9UN36 371 aaKnown RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 OR10H1Q9Y4A9 318 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 SPTBP11277 2137 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 ANTXRLA6NF34 631 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 CENPBD1B2RD01 187 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 CACNB4O00305 520 aaPredicted RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 CLDN2P57739 230 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 ELAVL3Q14576 367 aaKnown RBP15.2■□□□□ 0.02
PCDH1-203ENST00000394536 MEIOBQ8N635 442 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 LRIG1Q96JA1 1093 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 FBXL12Q9NXK8 326 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 NTNG1Q9Y2I2 539 aa15.2■□□□□ 0.02
PCDH1-203ENST00000394536 EDDM13A0A1B0GTR0 161 aa15.19■□□□□ 0.02
PCDH1-203ENST00000394536 DUXAA6NLW8 204 aa15.19■□□□□ 0.02
PCDH1-203ENST00000394536 HMGN4O00479 90 aa15.19■□□□□ 0.02
PCDH1-203ENST00000394536 GCM2O75603 506 aaPredicted RBP15.19■□□□□ 0.02
PCDH1-203ENST00000394536 RLN1P04808 185 aa15.19■□□□□ 0.02
PCDH1-203ENST00000394536 CTSLP07711 333 aa15.19■□□□□ 0.02
PCDH1-203ENST00000394536 NDUFV2P19404 249 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms