RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FABP7O15540 132 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TSPAN6O43657 245 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ACPPP15309 386 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 MAT2AP31153 395 aaKnown RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 BMP8BP34820 402 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 GPR4P46093 362 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 CCR8P51685 355 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ERVK-21P61565 698 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 LINC00299Q6ZSB3 139 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 BMP8AQ7Z5Y6 402 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 PDZD3Q86UT5 571 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 SDR16C5Q8N3Y7 309 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ZNF248Q8NDW4 579 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 OR2T33Q8NG76 320 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 CPPED1Q9BRF8 314 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 PLSCR3Q9NRY6 295 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ZNF639Q9UID6 485 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 MED31Q9Y3C7 131 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 KLK4Q9Y5K2 254 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 HCFC2Q9Y5Z7 792 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ZNF646O15015 1829 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 OR2A25A4D2G3 310 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 HEPACAM2A8MVW5 462 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 M0R3H8 397 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 MMP2P08253 660 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ENDOUP21128 410 aaKnown RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 ADH7P40394 386 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 CDKN2CP42773 168 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 RNF144AP50876 292 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 ZNF91Q05481 1191 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ZNF805Q5CZA5 627 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TMEM17Q86X19 198 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 C17orf62Q9BQA9 187 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 PHPT1Q9NRX4 125 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 CLDND1Q9NY35 253 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 OR6C2Q9NZP2 312 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TEX46H3BTG2 121 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 KIAA0355O15063 1070 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 GIFP27352 417 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 NAA10P41227 235 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 MAP4K2Q12851 820 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 BOLLQ8N9W6 283 aaKnown RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 FATE1Q969F0 183 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 GALNT9Q9HCQ5 603 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 AKIP1Q9NQ31 210 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TEX10Q9NXF1 929 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 WDR45Q9Y484 360 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TFP02787 698 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 MTHFD2P13995 350 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 PVALBP20472 110 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 SLAMF1Q13291 335 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 AAK1Q2M2I8 961 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ESCO2Q56NI9 601 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TMEM69Q5SWH9 247 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 KCTD9Q7L273 389 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 HDDC3Q8N4P3 179 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ANKK1Q8NFD2 765 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 GNPDA2Q8TDQ7 276 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 ADAMTS19Q8TE59 1207 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 TFGQ92734 400 aaPredicted RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 DUS3LQ96G46 650 aaKnown RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 C7orf34Q96L11 122 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 LYARQ9NX58 379 aaKnown RBP14.56□□□□□ -0.08
SHH-201ENST00000297261 COPZ2Q9P299 210 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 B8ZZF3 427 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 H7BY64 318 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 M0R036 132 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SPDEFO95238 335 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SEC23BQ15437 767 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 ACOT12Q8WYK0 555 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SMARCD2Q92925 531 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 PRAP1Q96NZ9 151 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 IFT46Q9NQC8 304 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 GLTPQ9NZD2 209 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SHROOM3Q8TF72 1996 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 E7EQ34 232 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 RBBP9O75884 186 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 DLEU7Q6UYE1 221 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.55□□□□□ -0.08
SHH-201ENST00000297261 HRASLS5Q96KN8 279 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 HOXD1Q9GZZ0 328 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SFXN1Q9H9B4 322 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 OR2S2Q9NQN1 319 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 CNOT2Q9NZN8 540 aaKnown RBP14.55□□□□□ -0.08
SHH-201ENST00000297261 ZNF705EA8MWA4 302 aaPredicted RBP14.55□□□□□ -0.08
SHH-201ENST00000297261 CLEC2LP0C7M8 214 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 CHMP24386 653 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 GRK6P43250 576 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 TCTN1Q2MV58 587 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 FAM76BQ5HYJ3 339 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 BTN2A1Q7KYR7 527 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 COMMD6Q7Z4G1 85 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 TRMT10AQ8TBZ6 339 aaKnown RBP14.55□□□□□ -0.08
SHH-201ENST00000297261 MBOAT4Q96T53 435 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 NTN4Q9HB63 628 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 PLAC1Q9HBJ0 212 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 PCDHB16Q9NRJ7 776 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 NLGN3Q9NZ94 848 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SCN10AQ9Y5Y9 1956 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 BRWD1Q9NSI6 2320 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms