RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MGAT4BQ9UQ53 548 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 SEC14L5O43304 696 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 VNN2O95498 520 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 FURINP09958 794 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 TBXA2RP21731 343 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 ACVR1BP36896 505 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 SLC1A3P43003 542 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 HSF2Q03933 536 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 PLA1AQ53H76 456 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 HECTD3Q5T447 861 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 CFHR5Q9BXR6 569 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 STOX2Q9P2F5 926 aaPredicted RBP13.54□□□□□ -0.24
SDC1-201ENST00000254351 NTNG1Q9Y2I2 539 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 CHST2Q9Y4C5 530 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 MAB21L2Q9Y586 359 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 DSPPQ9NZW4 1301 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 GPR171O14626 319 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 TOR1AO14656 332 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 SLC9A3R1O14745 358 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 MAGEB4O15481 346 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 TSPAN6O43657 245 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 TRIM3O75382 744 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 APOC3P02656 99 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 ANKRD34CP0C6C1 535 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 ARAFP10398 606 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 ATP1B2P14415 290 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 PRPH2P23942 346 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 BTCP35070 178 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 NUP62P37198 522 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 RPL35P42766 123 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 EEF1A2Q05639 463 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 TRIM71Q2Q1W2 868 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 SLC25A35Q3KQZ1 300 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 LIPJQ5W064 366 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 OR13C5Q8NGS8 318 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 CHTF18Q8WVB6 975 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 ZC3HAV1LQ96H79 300 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 SORCS2Q96PQ0 1159 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 TMEM175Q9BSA9 504 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 OR10A4Q9H209 315 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 KCNN2Q9H2S1 579 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 SDHAF2Q9NX18 166 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 TESQ9UGI8 421 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 SIRT4Q9Y6E7 314 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 ALPK3Q96L96 1907 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 RRASP10301 218 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 PTHLHP12272 177 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 IRS1P35568 1242 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 ERVFC1P60507 584 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 MELKQ14680 651 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 DDX53Q86TM3 631 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 CHCHD4Q8N4Q1 142 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 OR8D4Q8NGM9 314 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 OR6T1Q8NGN1 323 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 ELMOD3Q96FG2 381 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 IL17FQ96PD4 163 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 GSDMCQ9BYG8 508 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 GSX2Q9BZM3 304 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 DPAGT1Q9H3H5 408 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 GHITMQ9H3K2 345 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 DDX31Q9H8H2 851 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 ZSCAN32Q9NX65 697 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 FBXL2Q9UKC9 423 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 CPSF4LA6NMK7 179 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 SOCS6O14544 535 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 GPR37L1O60883 481 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 SIX6O95475 246 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 HLA-DPB1P04440 258 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 GPR4P46093 362 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 CAMK2DQ13557 499 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 FCRLBQ6BAA4 426 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 Q6ZVL8 140 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 MRPL10Q7Z7H8 261 aaKnown RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 OR4D9Q8NGE8 314 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 TEX47Q8TBZ9 253 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 KIAA1143Q96AT1 154 aaPredicted RBP13.53□□□□□ -0.24
SDC1-201ENST00000254351 ORAI1Q96D31 301 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 SCRN2Q96FV2 425 aa13.53□□□□□ -0.24
SDC1-201ENST00000254351 SMAD9O15198 467 aaKnown RBP13.52□□□□□ -0.24
SDC1-201ENST00000254351 PRKRAO75569 313 aaKnown RBP13.52□□□□□ -0.24
SDC1-201ENST00000254351 NR2F1P10589 423 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 GNSP15586 552 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 AHRP35869 848 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 CTSCP53634 463 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 SIM1P81133 766 aaPredicted RBP13.52□□□□□ -0.24
SDC1-201ENST00000254351 MED27Q6P2C8 311 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 TMEM107Q6UX40 140 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 RRM2BQ7LG56 351 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 MOSPD2Q8NHP6 518 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 KLHL15Q96M94 604 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 SFXN2Q96NB2 322 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 ARHGAP9Q9BRR9 750 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 OSGEPL1Q9H4B0 414 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 CPNE7Q9UBL6 633 aa13.52□□□□□ -0.24
SDC1-201ENST00000254351 PRR23AA6NEV1 266 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 FAAHO00519 579 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 ZNF197O14709 1029 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 PIP5K1CO60331 668 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 REM1O75628 298 aa13.52□□□□□ -0.25
SDC1-201ENST00000254351 ACP2P11117 423 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms