RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 CPN2P22792 545 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 NCBP2P52298 156 aaKnown RBP eCLIP18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 BHLHB9Q6PI77 547 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 ERN2Q76MJ5 926 aaKnown RBP18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 RNF31Q96EP0 1072 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 ZC3HAV1LQ96H79 300 aaKnown RBP18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 DEFB118Q96PH6 123 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 SOSTQ9BQB4 213 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 MENTQ9BUN1 341 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 FAIM2Q9BWQ8 316 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 RPRD1BQ9NQG5 326 aaKnown RBP18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 NDRG2Q9UN36 371 aaKnown RBP18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 HCFC2Q9Y5Z7 792 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 A0A087WUU8 490 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 CSF2P04141 144 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 GAAP10253 952 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 PTBP1P26599 531 aaKnown RBP eCLIP18.93■□□□□ 0.622e-8■■■■□ 26
SYNGAP1-227ENST00000638142 FUT5Q11128 374 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 TMEM52BQ4KMG9 183 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 CCDC58Q4VC31 144 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 PLET1Q6UQ28 207 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 OLIG3Q7RTU3 272 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 TCTE3Q8IZS6 198 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 GJD3Q8N144 294 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 AMER3Q8N944 861 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 ZNF485Q8NCK3 441 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 SFXN5Q8TD22 340 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 JPH3Q8WXH2 748 aaPredicted RBP18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 SLC23A2Q9UGH3 650 aa18.93■□□□□ 0.62
SYNGAP1-227ENST00000638142 COL4A3Q01955 1670 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 A0A1W2PPV9 198 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 CASKO14936 926 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PROM1O43490 865 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 CLEC3AO75596 197 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 SLC2A2P11168 524 aaPredicted RBP18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 SSTR4P31391 388 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 SSR2P43308 183 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 MAP2K3P46734 347 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 SLC6A11P48066 632 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 TAS2R38P59533 333 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 TSPAN31Q12999 210 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PRAMEF8Q5VWM4 474 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PRAMEF7Q5VXH5 474 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 TRIQKQ629K1 86 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 TYW3Q6IPR3 259 aaKnown RBP18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 TP53I13Q8NBR0 393 aaPredicted RBP18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 C19orf18Q8NEA5 215 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 UBASH3BQ8TF42 649 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 COX14Q96I36 57 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 BBS4Q96RK4 519 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PPP1R3EQ9H7J1 279 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 CTPS2Q9NRF8 586 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 WDR70Q9NW82 654 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 COMMD3Q9UBI1 195 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 GPR52Q9Y2T5 361 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 SMIM30A4D0T7 59 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 TRIM3O75382 744 aaPredicted RBP18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 ADH5P11766 374 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 HOXC5Q00444 222 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 C9orf64Q5T6V5 341 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PDE4DIPQ5VU43 2346 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 RASSF6Q6ZTQ3 369 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PEX5LQ8IYB4 626 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 OR8D4Q8NGM9 314 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 ZSWIM3Q96MP5 696 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 SLC27A6Q9Y2P4 619 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 PCDHGB7Q9Y5F8 929 aa18.92■□□□□ 0.62
SYNGAP1-227ENST00000638142 FAM170BA6NMN3 283 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 SYT5O00445 386 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 ERP29P30040 261 aaKnown RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 SLC1A3P43003 542 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 PRKAG1P54619 331 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 TAS2R41P59536 307 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 GPR19Q15760 415 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 TMEM44Q2T9K0 475 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 HNRNPA1L2Q32P51 320 aaKnown RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 METRNLQ641Q3 311 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 MZT2BQ6NZ67 158 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 CNIH2Q6PI25 160 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 LRRTM4Q86VH4 590 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 Q8N402 240 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 POGLUT1Q8NBL1 392 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 RFKQ969G6 155 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 OTUB1Q96FW1 271 aaPredicted RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 RBFOX1Q9NWB1 397 aaKnown RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 KLHL21Q9UJP4 597 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 CKAP5Q14008 2032 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 A0A0G2JN53 185 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 EDDM13A0A1B0GTR0 161 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 MAN2B1O00754 1011 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 LRRTM2O43300 516 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 MYCP01106 439 aaPredicted RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 APEX1P27695 318 aaKnown RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 CSNK1G2P78368 415 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 LASP1Q14847 261 aaKnown RBP18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 TRAM2Q15035 370 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 TIGD3Q6B0B8 471 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 ADAMTSL4Q6UY14 1074 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 HMGN2P46Q86SG4 172 aa18.91■□□□□ 0.62
SYNGAP1-227ENST00000638142 C12orf40Q86WS4 652 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms