RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GSTA2P09210 222 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 CHMP24386 653 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 DEKP35659 375 aaKnown RBP17.59■□□□□ 0.41
CLN3-262ENST00000637699 LHX2P50458 406 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 EEF1A1P68104 462 aaKnown RBP17.59■□□□□ 0.41
CLN3-262ENST00000637699 MAP4K2Q12851 820 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 EEF1A1P5Q5VTE0 462 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 SCIMPQ6UWF3 145 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 YTHDF3Q7Z739 585 aaKnown RBP17.59■□□□□ 0.41
CLN3-262ENST00000637699 ADCY4Q8NFM4 1077 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 FBF1Q8TES7 1133 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 ATP6V1E2Q96A05 226 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 CTHRC1Q96CG8 243 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 PIK3IP1Q96FE7 263 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 PERPQ96FX8 193 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 ERP44Q9BS26 406 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 BDH2Q9BUT1 245 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 MAT2BQ9NZL9 334 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 WHRNQ9P202 907 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 PLLPQ9Y342 182 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 CSPG4Q6UVK1 2322 aa17.58■□□□□ 0.41
CLN3-262ENST00000637699 A0A087X1B8 175 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 GOLGA6L10A6NI86 522 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 DEFB108AA8MXU0 73 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 OR7A17O14581 309 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 MSTNO14793 375 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 ACOX3O15254 700 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 C2P06681 752 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 MAPK12P53778 367 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 MROH9Q5TGP6 573 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 TTC19Q6DKK2 380 aaPredicted RBP17.58■□□□□ 0.4
CLN3-262ENST00000637699 SLC48A1Q6P1K1 146 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 AAGABQ6PD74 315 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 PAGE2Q7Z2X7 111 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 P4HA3Q7Z4N8 544 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 CCDC25Q86WR0 208 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 PLCZ1Q86YW0 608 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 CNEP1R1Q8N9A8 125 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 LRRN4CLQ8ND94 238 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 OR52R1Q8NGF1 315 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 MRRFQ96E11 262 aaKnown RBP17.58■□□□□ 0.4
CLN3-262ENST00000637699 SFXN2Q96NB2 322 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 FAM111AQ96PZ2 611 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 CCL19Q99731 98 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 AHSPQ9NZD4 102 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 ZNF639Q9UID6 485 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 FBXL2Q9UKC9 423 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 CES1P1Q9UKY3 287 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 PCDHA9Q9Y5H5 950 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 TNPO3Q9Y5L0 923 aaKnown RBP17.58■□□□□ 0.4
CLN3-262ENST00000637699 HIVEP2P31629 2446 aa17.58■□□□□ 0.4
CLN3-262ENST00000637699 TRIM64A6NGJ6 449 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 TRIM64BA6NI03 449 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 CBX7O95931 251 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 CSNK2A2P19784 350 aaPredicted RBP17.57■□□□□ 0.4
CLN3-262ENST00000637699 SRD5A2P31213 254 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 CLDN18P56856 261 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 HMGCS1Q01581 520 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 DUSP2Q05923 314 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 ACAP2Q15057 778 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 ACKR1Q16570 336 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 TRMT12Q53H54 448 aaKnown RBP17.57■□□□□ 0.4
CLN3-262ENST00000637699 SGO1Q5FBB7 561 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 FRG2Q64ET8 278 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 OR5M10Q6IEU7 315 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 FAM180BQ6P0A1 224 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 SPATA4Q8NEY3 305 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 OR52B6Q8NGF0 335 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 TMBIM1Q969X1 311 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 TMCO6Q96DC7 493 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 STARD4Q96DR4 205 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 COL21A1Q96P44 957 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 FRG2BQ96QU4 278 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 MED18Q9BUE0 208 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 ZNF226Q9NYT6 803 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 GRHL1Q9NZI5 618 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 ADAM29Q9UKF5 820 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 WIF1Q9Y5W5 379 aa17.57■□□□□ 0.4
CLN3-262ENST00000637699 C1orf226A1L170 272 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 REM1O75628 298 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 ATP1B1P05026 303 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 ZNF708P17019 499 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 FPR1P21462 350 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 DRD5P21918 477 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 CASQ1P31415 396 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 STX2P32856 288 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 CD79BP40259 229 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 MC3RP41968 323 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 PPICP45877 212 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 CCNG1P51959 295 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 ETF1P62495 437 aaKnown RBP17.56■□□□□ 0.4
CLN3-262ENST00000637699 C2orf54Q08AI8 447 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 LTB4RQ15722 352 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 VWA1Q6PCB0 445 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 PRSS57Q6UWY2 283 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 SYT10Q6XYQ8 523 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 METTL4Q8N3J2 472 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 DKKL1Q9UK85 242 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 DLGAP4Q9Y2H0 992 aa17.56■□□□□ 0.4
CLN3-262ENST00000637699 CCDC189A1A4V9 331 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms