RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 OPN1SWP03999 348 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ALOX5P09917 674 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 CDK4P11802 303 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 TNNI3P19429 210 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ITIH1P19827 911 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 AGXTP21549 392 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 PEX2P28328 305 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 CLDN6P56747 220 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 RAB15P59190 212 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 KCNJ10P78508 379 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ELAVL1Q15717 326 aaKnown RBP17.16■□□□□ 0.34
CLN3-254ENST00000637050 LPCAT4Q643R3 524 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 RAB11FIP2Q7L804 512 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 TMEM151BQ8IW70 566 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ZNF607Q96SK3 696 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 CNPPD1Q9BV87 410 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 SEMA6AQ9H2E6 1030 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 IL1RAPQ9NPH3 570 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 PNO1Q9NRX1 252 aaKnown RBP17.16■□□□□ 0.34
CLN3-254ENST00000637050 CALML5Q9NZT1 146 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 ERVK-19Q9WJR5 959 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 WDR87Q6ZQQ6 2873 aa17.16■□□□□ 0.34
CLN3-254ENST00000637050 A0A0G2JPF8 293 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 A8MVJ9 347 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 HNRNPCL2B2RXH8 293 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 HNRNPCL3B7ZW38 293 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 PROB1E7EW31 1015 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 PRAMEF2O60811 474 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 SOX30O94993 753 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 MFN2O95140 757 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 H6PDO95479 791 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 HNRNPCL4P0DMR1 293 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 ETS2P15036 469 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 ETV5P41161 510 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 PGDP52209 483 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 ARHGAP11BQ3KRB8 267 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 GPAT3Q53EU6 434 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 DCAF12Q5T6F0 453 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 DHRS13Q6UX07 377 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 FKBP9P1Q75LS8 142 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 C16orf62Q7Z3J2 963 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 ZNF615Q8N8J6 731 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 OR7G1Q8NGA0 311 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 LZICQ8WZA0 190 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 CENPNQ96H22 339 aaPredicted RBP17.15■□□□□ 0.34
CLN3-254ENST00000637050 TPD52L3Q96J77 140 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 LMF2Q9BU23 707 aaKnown RBP17.15■□□□□ 0.34
CLN3-254ENST00000637050 BTBD2Q9BX70 525 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 ULBP3Q9BZM4 244 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 FOLH1BQ9HBA9 442 aa17.15■□□□□ 0.34
CLN3-254ENST00000637050 HEMK1Q9Y5R4 338 aaPredicted RBP17.15■□□□□ 0.34
CLN3-254ENST00000637050 GPC6Q9Y625 555 aaPredicted RBP17.15■□□□□ 0.34
CLN3-254ENST00000637050 SEC16AO15027 2179 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 FAM149AA5PLN7 773 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 CLOCKO15516 846 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 PEX1O43933 1283 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 CNOT3O75175 753 aaKnown RBP17.14■□□□□ 0.33
CLN3-254ENST00000637050 DKK1O94907 266 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 NKX2-2O95096 273 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 LDLRP01130 860 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 CLPSP04118 112 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 ZNF155Q12901 538 aaPredicted RBP17.14■□□□□ 0.33
CLN3-254ENST00000637050 MRPL14Q6P1L8 145 aaKnown RBP17.14■□□□□ 0.33
CLN3-254ENST00000637050 SHISA6Q6ZSJ9 500 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 SLCO6A1Q86UG4 719 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 KRT73Q86Y46 540 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 CHDHQ8NE62 594 aaPredicted RBP17.14■□□□□ 0.33
CLN3-254ENST00000637050 DEFB124Q8NES8 71 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 SENP5Q96HI0 755 aaPredicted RBP17.14■□□□□ 0.33
CLN3-254ENST00000637050 FBXL20Q96IG2 436 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 VSTM2LQ96N03 204 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 DEPDC7Q96QD5 511 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 ZPBPQ9BS86 351 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 OR10A5Q9H207 317 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 SLC38A1Q9H2H9 487 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 AKIRIN1Q9H9L7 192 aaPredicted RBP17.14■□□□□ 0.33
CLN3-254ENST00000637050 SATB2Q9UPW6 733 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 PCDHGB3Q9Y5G1 929 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 B3GALT1Q9Y5Z6 326 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 CLCA3PQ9Y6N3 262 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 DSPPQ9NZW4 1301 aa17.14■□□□□ 0.33
CLN3-254ENST00000637050 IDSB3KWA1 339 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 DYRK3O43781 588 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 DEAF1O75398 565 aaPredicted RBP17.13■□□□□ 0.33
CLN3-254ENST00000637050 SERPINB7O75635 380 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 PRSS23O95084 383 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 KLK3P07288 261 aaPredicted RBP17.13■□□□□ 0.33
CLN3-254ENST00000637050 CD247P20963 164 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 LIMK1P53667 647 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 HES3Q5TGS1 186 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 MLIPQ5VWP3 458 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 ZNF517Q6ZMY9 492 aaPredicted RBP17.13■□□□□ 0.33
CLN3-254ENST00000637050 OLIG3Q7RTU3 272 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 ARMC8Q8IUR7 673 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 ZDHHC21Q8IVQ6 265 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 SMYD1Q8NB12 490 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 C7orf34Q96L11 122 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 COL21A1Q96P44 957 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 TAAR9Q96RI9 348 aa17.13■□□□□ 0.33
CLN3-254ENST00000637050 SPSB2Q99619 263 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms