RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MEAF6Q9HAF1 191 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 NINQ8N4C6 2090 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 POLEQ07864 2286 aa15.5■□□□□ 0.07
TRIM28-215ENST00000601150 ANKRD33BA6NCL7 494 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SLCO1B7G3V0H7 640 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 UPK1AO00322 258 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 HDAC3O15379 428 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 HS6ST1O60243 411 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SEMA7AO75326 666 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 NME6O75414 186 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-215ENST00000601150 ABCB1P08183 1280 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-215ENST00000601150 STSP08842 583 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 CT45A8P0DMV1 189 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 CT45A9P0DMV2 189 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 CORO7P57737 925 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 KCNJ2P63252 427 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 OCRLQ01968 901 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 ZNF155Q12901 538 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-215ENST00000601150 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.49■□□□□ 0.072e-7■□□□□ 10.6
TRIM28-215ENST00000601150 CT45A2Q5DJT8 189 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 TBCELQ5QJ74 424 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 CPTPQ5TA50 214 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 PRAMEF20Q5VT98 475 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 NUP54Q7Z3B4 507 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SLC22A16Q86VW1 577 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SLC34A3Q8N130 599 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 GHDCQ8N2G8 530 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 KRTCAP2Q8N6L1 136 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 NATD1Q8N6N6 113 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 OR7A2PQ8NGA2 310 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SPPL2AQ8TCT8 520 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 DIO2Q92813 273 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 MAGED4Q96JG8 741 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 PRPF18Q99633 342 aaKnown RBP15.49■□□□□ 0.07
TRIM28-215ENST00000601150 TTTY12Q9BZ98 90 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 IL1RL2Q9HB29 575 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 ATAD3AQ9NVI7 634 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 TUBA8Q9NY65 449 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-215ENST00000601150 MAPRE3Q9UPY8 281 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SLC5A6Q9Y289 635 aa15.49■□□□□ 0.07
TRIM28-215ENST00000601150 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.49■□□□□ 0.07
TRIM28-215ENST00000601150 TRPC5OSA6NMA1 111 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 FAM166BA8MTA8 275 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 GLSO94925 669 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-215ENST00000601150 PSMG1O95456 288 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 KITP10721 976 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 LAMP1P11279 417 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 LBPP18428 481 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 CDK9P50750 372 aaKnown RBP15.48■□□□□ 0.07
TRIM28-215ENST00000601150 CLDN8P56748 225 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 C21orf58P58505 322 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 FOXO1Q12778 655 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 GTF3C1Q12789 2109 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 MLC1Q15049 377 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 HYAL4Q2M3T9 481 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 CMPK2Q5EBM0 449 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 SLC44A2Q8IWA5 706 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-215ENST00000601150 RIMKLAQ8IXN7 391 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 TMBIM1Q969X1 311 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 COQ8BQ96D53 544 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 DOHHQ9BU89 302 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 PROK2Q9HC23 129 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 MARCOQ9UEW3 520 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-215ENST00000601150 BOKQ9UMX3 212 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-215ENST00000601150 NCKAP5O14513 1909 aa15.48■□□□□ 0.07
TRIM28-215ENST00000601150 A0A1W2PRB8 838 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 SDHDO14521 159 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 SASH3O75995 380 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 KRT20P35900 424 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 DIO3P55073 304 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 ZNHIT3Q15649 155 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-215ENST00000601150 C4orf17Q53FE4 359 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 OGFOD2Q6N063 350 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 NPSR1Q6W5P4 371 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 LARP4Q71RC2 724 aaKnown RBP eCLIP15.47■□□□□ 0.07
TRIM28-215ENST00000601150 WDR75Q8IWA0 830 aaKnown RBP15.47■□□□□ 0.07
TRIM28-215ENST00000601150 FAM109AQ8N4B1 249 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 TMEM251Q8N6I4 163 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 OR52N2Q8NGI0 321 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 CEP70Q8NHQ1 597 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 HGDQ93099 445 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 COL21A1Q96P44 957 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 ANGPTL4Q9BY76 406 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 ACBD3Q9H3P7 528 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 C3orf14Q9HBI5 128 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 ZFP64Q9NPA5 681 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 OR10H1Q9Y4A9 318 aa15.47■□□□□ 0.07
TRIM28-215ENST00000601150 USP9XQ93008 2570 aaPredicted RBP15.46■□□□□ 0.07
TRIM28-215ENST00000601150 A0A1B0GUH1 482 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 OR6C70A6NIJ9 312 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 TTC36A6NLP5 189 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 CDC40O60508 579 aaKnown RBP eCLIP15.46■□□□□ 0.07
TRIM28-215ENST00000601150 SLC19A2O60779 497 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 ABCB7O75027 752 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 UGT2B11O75310 529 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 REM1O75628 298 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 SNX4O95219 450 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 EFNA1P20827 205 aaPredicted RBP15.46■□□□□ 0.07
TRIM28-215ENST00000601150 CASP3P42574 277 aa15.46■□□□□ 0.07
TRIM28-215ENST00000601150 PPP2R2AP63151 447 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms