RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 LUZP2Q86TE4 346 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 KIF18BQ86Y91 864 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 TRIM42Q8IWZ5 723 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 NOA1Q8NC60 698 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 CHDHQ8NE62 594 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 C17orf47Q8NEP4 570 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 ISL2Q96A47 359 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 CNRIP1Q96F85 164 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 TUBA1CQ9BQE3 449 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 VPS29Q9UBQ0 182 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 PRODH2Q9UF12 536 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 TRPS1Q9UHF7 1281 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 DLGAP4Q9Y2H0 992 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 ANKHD1Q8IWZ3 2542 aaKnown RBP16.02■□□□□ 0.15
SHKBP1-223ENST00000600552 EXOC1LA0A1B0GW35 172 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 CD8B2A6NJW9 211 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 SNPHO15079 494 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 CDH16O75309 829 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 KRT6AP02538 564 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 KRT6BP04259 564 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 IL3P08700 152 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 SNRPAP09012 282 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 SBK3P0C264 359 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 NAGAP17050 411 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 OPRM1P35372 400 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 SOX18P35713 384 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 PEX19P40855 299 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 PTGDSP41222 190 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 SLCO1A2P46721 670 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 CPA2P48052 419 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 KRT6CP48668 564 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 EMDP50402 254 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 FOXF2Q12947 444 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 POU4F3Q15319 338 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 WHAMMP3Q1A5X7 153 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 UNC50Q53HI1 259 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 OR9A2Q8NGT5 310 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 METTL6Q8TCB7 284 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 ADOQ96SZ5 270 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 FOXC2Q99958 501 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 YIPF4Q9BSR8 244 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 EBPLQ9BY08 206 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 TSPYL1Q9H0U9 437 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 CALHM2Q9HA72 323 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 BRF2Q9HAW0 419 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF639Q9UID6 485 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF225Q9UK10 706 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 EDARQ9UNE0 448 aa16.01■□□□□ 0.15
SHKBP1-223ENST00000600552 ACOX3O15254 700 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 PCDH7O60245 1069 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 ERN1O75460 977 aaKnown RBP16■□□□□ 0.15
SHKBP1-223ENST00000600552 ACTL6AO96019 429 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 KLK2P20151 261 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 DRD5P21918 477 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 KRT20P35900 424 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 PPICP45877 212 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 CORO7P57737 925 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 HMGCS1Q01581 520 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 NHSL2Q5HYW2 709 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 LGSNQ5TDP6 509 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 GPRIN3Q6ZVF9 776 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 TGIF2LYQ8IUE0 185 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 RELL1Q8IUW5 271 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 MMGT1Q8N4V1 131 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 WDSUB1Q8N9V3 476 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 NINJ1Q92982 152 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 INTS12Q96CB8 462 aaKnown RBP16■□□□□ 0.15
SHKBP1-223ENST00000600552 TMCO6Q96DC7 493 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 ZNF681Q96N22 645 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 COL21A1Q96P44 957 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 FUT8Q9BYC5 575 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 GIMAP4Q9NUV9 329 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 TAS2R10Q9NYW0 307 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 TMEM216Q9P0N5 145 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 SENP1Q9P0U3 644 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 FOXD3Q9UJU5 478 aaPredicted RBP16■□□□□ 0.15
SHKBP1-223ENST00000600552 DKKL1Q9UK85 242 aa16■□□□□ 0.15
SHKBP1-223ENST00000600552 EXO1Q9UQ84 846 aaKnown RBP16■□□□□ 0.15
SHKBP1-223ENST00000600552 RPH3AQ9Y2J0 694 aaPredicted RBP16■□□□□ 0.15
SHKBP1-223ENST00000600552 MBD3L4A6NDZ8 208 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 MBD3L3A6NE82 208 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 FRG2CA6NGY1 282 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 MBD3L5A6NJ08 208 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 GOLGA8RI6L899 631 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 ULK1O75385 1050 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 CBR3O75828 277 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 EPXP11678 715 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 IL12BP29460 328 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 HTR6P50406 440 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 DCAF7P61962 342 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 TRA2BP62995 288 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 RASA2Q15283 850 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 ERCC6LQ2NKX8 1250 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 SH2D4BQ5SQS7 431 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 ENPP6Q6UWR7 440 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 LARP4Q71RC2 724 aaKnown RBP eCLIP15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 IFNEQ86WN2 208 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 GCNT2Q8N0V5 402 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 TMEM151AQ8N4L1 468 aa15.99■□□□□ 0.15
SHKBP1-223ENST00000600552 MBD3L2Q8NHZ7 208 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms