RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 DUSP22Q9NRW4 184 aa12.75□□□□□ -0.37
CCDC40-209ENST00000573474 ARMC1Q9NVT9 282 aa12.75□□□□□ -0.37
CCDC40-209ENST00000573474 NKX1-2Q9UD57 310 aaPredicted RBP12.75□□□□□ -0.37
CCDC40-209ENST00000573474 ANGPTL2Q9UKU9 493 aa12.75□□□□□ -0.37
CCDC40-209ENST00000573474 PADI1Q9ULC6 663 aa12.75□□□□□ -0.37
CCDC40-209ENST00000573474 SAMD4AQ9UPU9 718 aaKnown RBP12.75□□□□□ -0.37
CCDC40-209ENST00000573474 SATB2Q9UPW6 733 aa12.75□□□□□ -0.37
CCDC40-209ENST00000573474 ERVK-19Q9WJR5 959 aa12.75□□□□□ -0.37
CCDC40-209ENST00000573474 HEMK1Q9Y5R4 338 aaPredicted RBP12.75□□□□□ -0.37
CCDC40-209ENST00000573474 PRAMEF27A3QJZ7 478 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 TTC36A6NLP5 189 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 HRKO00198 91 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 NME6O75414 186 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 PDE9AO76083 593 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 PGM3O95394 542 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 BAG2O95816 211 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ANPEPP15144 967 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 AQP1P29972 269 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 MAP3K8P41279 467 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 NOVA1P51513 510 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 CRISP3P54108 245 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 PCBP3P57721 371 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ZNF155Q12901 538 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 NCF4Q15080 339 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ZNHIT3Q15649 155 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 MAPK11Q15759 364 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 SNCBQ16143 134 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 SYPL1Q16563 259 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 DUSP5Q16690 384 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 FAM98BQ52LJ0 330 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 FAAH2Q6GMR7 532 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 HEPHL1Q6MZM0 1159 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 CBLL1Q75N03 491 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 EIF3MQ7L2H7 374 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 C16orf62Q7Z3J2 963 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 WDR53Q7Z5U6 358 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ZNF615Q8N8J6 731 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ANKFN1Q8N957 763 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 SLC16A11Q8NCK7 471 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 MORN4Q8NDC4 146 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 PAPD5Q8NDF8 572 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 SLCO4A1Q96BD0 722 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 OTUB1Q96FW1 271 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 TRNT1Q96Q11 434 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ZNF607Q96SK3 696 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 LMF2Q9BU23 707 aaKnown RBP12.74□□□□□ -0.37
CCDC40-209ENST00000573474 CRB3Q9BUF7 120 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 FOLH1BQ9HBA9 442 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 BCL2L10Q9HD36 194 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 ADPRHL2Q9NX46 363 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 CALML5Q9NZT1 146 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 PRODH2Q9UF12 536 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 AURKCQ9UQB9 309 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 KCNE3Q9Y6H6 103 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 FER1L5A0AVI2 2057 aa12.74□□□□□ -0.37
CCDC40-209ENST00000573474 A0A0G2JPF8 293 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 TEX51A0A1B0GUA7 166 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 HNRNPCL2B2RXH8 293 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 HNRNPCL3B7ZW38 293 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 M0QX08 132 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 HNRNPRO43390 633 aaKnown RBP12.73□□□□□ -0.37
CCDC40-209ENST00000573474 SUV39H1O43463 412 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 BRINP1O60477 761 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 PRKD3O94806 890 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 NKX2-2O95096 273 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 TNFSF15O95150 251 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 ZNF682O95780 498 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 DDAH2O95865 285 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 AK1P00568 194 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 CLPSP04118 112 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 IGKV3-11P04433 115 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 RAB40ALP0C0E4 278 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 HNRNPCL4P0DMR1 293 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 FOXL2P58012 376 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 CHRNB3Q05901 458 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 SLC34A1Q06495 639 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 ARHGAP11BQ3KRB8 267 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 GPAT3Q53EU6 434 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 CYBRD1Q53TN4 286 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 SFT2D3Q587I9 215 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 TBCELQ5QJ74 424 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 TMEM205Q6UW68 189 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 ENPP6Q6UWR7 440 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 LANCL3Q6ZV70 420 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 KRT73Q86Y46 540 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 BBS10Q8TAM1 723 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 SLC2A12Q8TD20 617 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 CDS1Q92903 461 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 PYURFQ96I23 114 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 VSTM2LQ96N03 204 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 SLC46A1Q96NT5 459 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 SEPHS2Q99611 448 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 OR8D2Q9GZM6 311 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 MAGIXQ9H6Y5 334 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 YY1AP1Q9H869 796 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 C19orf25Q9UFG5 118 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-209ENST00000573474 CFL2Q9Y281 166 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 V9GYQ6 96 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 KIF26BQ2KJY2 2108 aa12.73□□□□□ -0.37
CCDC40-209ENST00000573474 A8MVJ9 347 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms