RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 EFHD2Q96C19 240 aaPredicted RBP9.5□□□□□ -0.89
SMG6-213ENST00000573166 IFT27Q9BW83 186 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 LYRM4Q9HD34 91 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 IL1RAPQ9NPH3 570 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 NECTIN3Q9NQS3 549 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 SMPD3Q9NY59 655 aaPredicted RBP9.5□□□□□ -0.89
SMG6-213ENST00000573166 PTGFRNQ9P2B2 879 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 B4GALT7Q9UBV7 327 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 OAZ3Q9UMX2 235 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 COL4A6Q14031 1691 aa9.5□□□□□ -0.89
SMG6-213ENST00000573166 CCDC187A0A096LP49 1063 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 OR2A25A4D2G3 310 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 RIIAD1A6NNX1 92 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 IDSB3KWA1 339 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 MEN1O00255 615 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 MYL12BO14950 172 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 ARHGEF9O43307 516 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 CDC40O60508 579 aaKnown RBP eCLIP9.49□□□□□ -0.89
SMG6-213ENST00000573166 ETHE1O95571 254 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 DBIP07108 87 aaKnown RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 DNAJA1P31689 397 aaKnown RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 ARRB2P32121 409 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 FOXC1Q12948 553 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 KCTD21Q4G0X4 260 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 FAM71E1Q6IPT2 247 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 DGLUCYQ7Z3D6 616 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 NAXDQ8IW45 347 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TMEM105Q8N8V8 129 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 ANKRD53Q8N9V6 530 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 OR10H5Q8NGA6 315 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 LOXL4Q96JB6 756 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 MAELQ96JY0 434 aaKnown RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 PRDM9Q9NQV7 894 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 SPIN1Q9Y657 262 aaPredicted RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 A0A0G2JPF8 293 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 A0A1W2PR48 441 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 HNRNPCL3B7ZW38 293 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TLX3O43711 291 aaPredicted RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 CTSVO60911 334 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 SLC35E2P0CK97 266 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 HNRNPCL4P0DMR1 293 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 IMPDH2P12268 514 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 ICAM2P13598 275 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TOP3AQ13472 1001 aaPredicted RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 FAM53BQ14153 422 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TRIM16LQ309B1 348 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 RUNDC3AQ59EK9 446 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 CCNJQ5T5M9 372 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 SPRED1Q7Z699 444 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 BPHLQ86WA6 291 aaPredicted RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 ESX1Q8N693 406 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 HORMAD2Q8N7B1 307 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 CDS1Q92903 461 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TMBIM1Q969X1 311 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 MVB12AQ96EY5 273 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 GLIPR2Q9H4G4 154 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 EPS8L2Q9H6S3 715 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 C8orf4Q9NR00 106 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TMEM74BQ9NUR3 256 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 PCDHGA7Q9Y5G6 932 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 EI24O14681 340 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 ALOX12BO75342 701 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 H6PDO95479 791 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 KRT8P05787 483 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 CBLBQ13191 982 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 RPS26P11Q5JNZ5 115 aaPredicted RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 PRAMEF17Q5VTA0 474 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 CCDC115Q96NT0 180 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 ALPK1Q96QP1 1244 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 HOXD1Q9GZZ0 328 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 DDX31Q9H8H2 851 aaKnown RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 KLF15Q9UIH9 416 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 PILRBQ9UKJ0 227 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 PCOLCE2Q9UKZ9 415 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 TCF20Q9UGU0 1960 aaKnown RBP9.49□□□□□ -0.89
SMG6-213ENST00000573166 SVILO95425 2214 aa9.49□□□□□ -0.89
SMG6-213ENST00000573166 PDLIM1O00151 329 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 IGHEP01854 428 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 HSD17B1P14061 328 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 TIAL1Q01085 375 aaKnown RBP eCLIP9.48□□□□□ -0.89
SMG6-213ENST00000573166 LAPTM4AQ15012 233 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 TRAM2Q15035 370 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 CLEC12AQ5QGZ9 265 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 BROXQ5VW32 411 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 FBXO42Q6P3S6 717 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 RETREG3Q86VR2 466 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 EPHX4Q8IUS5 362 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 ZNF540Q8NDQ6 660 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 SNIP1Q8TAD8 396 aaKnown RBP9.48□□□□□ -0.89
SMG6-213ENST00000573166 DNAJA3Q96EY1 480 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 SENP5Q96HI0 755 aaPredicted RBP9.48□□□□□ -0.89
SMG6-213ENST00000573166 COQ10BQ9H8M1 238 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 PI4KAP42356 2102 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 NPIPA5A0A0B4J1W7 369 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 IGHV3-20A0A0C4DH32 117 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 NPIPA7E9PJI5 369 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 BCKDKO14874 412 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 DSCR3O14972 297 aa9.48□□□□□ -0.89
SMG6-213ENST00000573166 RRP8O43159 456 aaKnown RBP9.48□□□□□ -0.89
SMG6-213ENST00000573166 UGT2B11O75310 529 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms