RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 NPHS1O60500 1241 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 HCN1O60741 890 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 ERN1O75460 977 aaKnown RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 BCAS2O75934 225 aaPredicted RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 PRF1P14222 555 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 NTSP30990 170 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 NUP107P57740 925 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 DCAF7P61962 342 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 RPL38P63173 70 aaKnown RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 ZNF155Q12901 538 aaPredicted RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 CEBPEQ15744 281 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 WLSQ5T9L3 541 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 ANGPTL8Q6UXH0 198 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 NPSR1Q6W5P4 371 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 NUP54Q7Z3B4 507 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 CCDC71Q8IV32 467 aaPredicted RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.28■□□□□ 0.26e-11■■■■■ 32.3
CTDNEP1-207ENST00000572043 RND1Q92730 232 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 SARAFQ96BY9 339 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 TSSK3Q96PN8 268 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 SECISBP2Q96T21 854 aaKnown RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 CENPHQ9H3R5 247 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 GLIPR2Q9H4G4 154 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 EML4Q9HC35 981 aaKnown RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 CHST11Q9NPF2 352 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 RYDENQ9NUL5 291 aaKnown RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 KLRF1Q9NZS2 232 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 GIMAP2Q9UG22 337 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 GPR55Q9Y2T6 319 aaPredicted RBP16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 TRAF6Q9Y4K3 522 aa16.28■□□□□ 0.2
CTDNEP1-207ENST00000572043 WDR91A4D1P6 747 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 FIGNL2A6NMB9 653 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 FAM90A27PA6NNH2 459 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 PIP5K1BO14986 540 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 RGS16O15492 202 aaPredicted RBP16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 COX6B1P14854 86 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 NAGAP17050 411 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 ACVR2AP27037 513 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 RFTN2Q52LD8 501 aaPredicted RBP16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 FNDC7Q5VTL7 733 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 WDR53Q7Z5U6 358 aaPredicted RBP16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 SLC44A2Q8IWA5 706 aaPredicted RBP16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 MREGQ8N565 214 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 OR4N2Q8NGD1 307 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 OR10Q1Q8NGQ4 319 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 NEIL3Q8TAT5 605 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 PKNOX2Q96KN3 472 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 VSTM2LQ96N03 204 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 ADOQ96SZ5 270 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 OSBPL11Q9BXB4 747 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 ACKR4Q9NPB9 350 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 BAIAP2L1Q9UHR4 511 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 MAPRE3Q9UPY8 281 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 RNF6Q9Y252 685 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 C15orf41Q9Y2V0 281 aa16.27■□□□□ 0.2
CTDNEP1-207ENST00000572043 PRRC2CQ9Y520 2896 aaKnown RBP16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 PRAMEF25A6NGN4 478 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 LSM1O15116 133 aaKnown RBP16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 TO15178 435 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 TYROBPO43914 113 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 PLOD3O60568 738 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 ICOSLGO75144 302 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 BPGMP07738 259 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 CT45A8P0DMV1 189 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 CT45A9P0DMV2 189 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 NEFHP12036 1026 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 SDC1P18827 310 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 PRPH2P23942 346 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 ARRB2P32121 409 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 KRT20P35900 424 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 PTGDSP41222 190 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 HSPB3Q12988 150 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 EIPR1Q53HC9 387 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 CT45A2Q5DJT8 189 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 IKBIPQ70UQ0 350 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 CLYBLQ8N0X4 340 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 OR1J4Q8NGS1 313 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 PPP1R14CQ8TAE6 165 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 CIDECQ96AQ7 238 aaPredicted RBP16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 EFHD2Q96C19 240 aaPredicted RBP16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 ERP27Q96DN0 273 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 TMEM41AQ96HV5 264 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 AMDHD1Q96NU7 426 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 COL21A1Q96P44 957 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 BTBD9Q96Q07 612 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 TMEM109Q9BVC6 243 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 UCK2Q9BZX2 261 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 DDX18Q9NVP1 670 aaKnown RBP16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 QPCTLQ9NXS2 382 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 TAS2R9Q9NYW1 312 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 SLC6A5Q9Y345 797 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 OR10H1Q9Y4A9 318 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 FAM215AQ9Y5M1 114 aa16.26■□□□□ 0.19
CTDNEP1-207ENST00000572043 NKX2-6A6NCS4 301 aa16.25■□□□□ 0.19
CTDNEP1-207ENST00000572043 UPK1AO00322 258 aa16.25■□□□□ 0.19
CTDNEP1-207ENST00000572043 COQ9O75208 318 aa16.25■□□□□ 0.19
CTDNEP1-207ENST00000572043 SKAP2O75563 359 aaPredicted RBP16.25■□□□□ 0.19
CTDNEP1-207ENST00000572043 IL12BP29460 328 aa16.25■□□□□ 0.19
CTDNEP1-207ENST00000572043 KIR3DL1P43629 444 aa16.25■□□□□ 0.19
CTDNEP1-207ENST00000572043 CDK9P50750 372 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms