RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 L3HYPDHQ96EM0 354 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 OXNAD1Q96HP4 312 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 C5orf34Q96MH7 638 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 COL21A1Q96P44 957 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SLITRK1Q96PX8 696 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 HBEGFQ99075 208 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CITED2Q99967 270 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 MACROD1Q9BQ69 325 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SH2D3AQ9BRG2 576 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TRIM51Q9BSJ1 452 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TUBGCP2Q9BSJ2 902 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 INPP5KQ9BT40 448 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SPXQ9BT56 116 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 THTPAQ9BU02 230 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CCDC32Q9BV29 185 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 GGACTQ9BVM4 153 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TTLL2Q9BWV7 592 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 HDHD5Q9BXW7 423 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SLC29A3Q9BZD2 475 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 DPH1Q9BZG8 443 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SDCBP2Q9H190 292 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 GANQ9H2C0 597 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MIXL1Q9H2W2 232 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 DSN1Q9H410 356 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ELOVL6Q9H5J4 265 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CERS4Q9HA82 394 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 FBRSL1Q9HCM7 1045 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 TMEM8AQ9HCN3 771 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZNF334Q9HCZ1 680 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 KCNK9Q9NPC2 374 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ABCB10Q9NRK6 738 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SLC22A11Q9NSA0 550 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RRP7BPQ9NSQ0 103 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RNF146Q9NTX7 359 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 AGPAT5Q9NUQ2 364 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TMEM184CQ9NVA4 438 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PRMT7Q9NVM4 692 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 KLHL28Q9NXS3 571 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SERGEFQ9UGK8 458 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 UBQLN2Q9UHD9 624 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TFR2Q9UP52 801 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 NAALADL1Q9UQQ1 740 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SH2B3Q9UQQ2 575 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PIN4Q9Y237 131 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 CA5BQ9Y2D0 317 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SLC9A8Q9Y2E8 581 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MRPS18CQ9Y3D5 142 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 GOLT1BQ9Y3E0 138 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MMACHCQ9Y4U1 282 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 CLDN16Q9Y5I7 305 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 A3GALT2U3KPV4 340 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 U3KQ87 197 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 USP42Q9H9J4 1324 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 METP08581 1390 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PXDNLA1KZ92 1463 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ATAD5Q96QE3 1844 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 LNP1A1A4G5 178 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FAM149AA5PLN7 773 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MBD3L4A6NDZ8 208 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 MBD3L3A6NE82 208 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 URADA6NGE7 173 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 LINC01548A6NM66 108 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 A8MV72 311 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 ISM1B1AKI9 464 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TISP43B9A030 160 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 B9A039 149 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TCP10L2B9ZVM9 353 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PRR23D1E9PI22 279 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 E9PI62 339 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MKRN2OSH3BPM6 223 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 I6L893 689 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 WWP2O00308 870 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SLC28A1O00337 649 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CXCL11O14625 94 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SCAMP2O15127 329 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 SMAD9O15198 467 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 SURF4O15260 269 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MID1O15344 667 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ARPC5O15511 151 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KIF1BO60333 1816 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PLIN3O60664 434 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HCN1O60741 890 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 GLRA3O75311 464 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 BANF1O75531 89 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ATRNO75882 1429 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KRT33AO76009 404 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 GADD45GO95257 159 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SEC24AO95486 1093 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PRAMEF12O95522 483 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CXCL14O95715 111 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 LGI1O95970 557 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C3P01024 1663 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FTH1P02794 183 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 RAF1P04049 648 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ALPPP05187 535 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C2P06681 752 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HEXAP06865 529 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MMP10P09238 476 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TMEM191BP0C7N4 346 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PRR23D2P0DMB1 279 aaPredicted RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms