RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 OARD1Q9Y530 152 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 CAPN6Q9Y6Q1 641 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 PRAMEF25A6NGN4 478 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 SEC14L5O43304 696 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 AQP8O94778 261 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 CD3EP07766 207 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 SLC35E2BP0CK96 405 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 SLC35E2P0CK97 266 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 PCNAP12004 261 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 TLX1P31314 330 aaPredicted RBP10.53□□□□□ -0.72
CLK3-222ENST00000568232 MMP16P51512 607 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 NUDT6P53370 316 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 SNTA1Q13424 505 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 ZNF460Q14592 562 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 TSNQ15631 228 aaKnown RBP10.53□□□□□ -0.72
CLK3-222ENST00000568232 FAM174BQ3ZCQ3 159 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 TMEM35AQ53FP2 167 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 NCMAPQ5T1S8 102 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 SNX31Q8N9S9 440 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 OMA1Q96E52 524 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 CAPS2Q9BXY5 557 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 C12orf65Q9H3J6 166 aaKnown RBP10.53□□□□□ -0.72
CLK3-222ENST00000568232 EHD1Q9H4M9 534 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 DNAJC11Q9NVH1 559 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 GPRC5BQ9NZH0 403 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 CLEC4AQ9UMR7 237 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 MGAM2Q2M2H8 2515 aa10.53□□□□□ -0.72
CLK3-222ENST00000568232 A0A1W2PR48 441 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 FAM187AA6NFU0 413 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ELOA3DA6NLF2 546 aaPredicted RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 TNFRSF21O75509 655 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 IPO7O95373 1038 aaKnown RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 PEPDP12955 493 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 EPB42P16452 691 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ZNF37AP17032 561 aaPredicted RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 NAGAP17050 411 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ITGA2P17301 1181 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 EPORP19235 508 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 GALNSP34059 522 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 CLDN20P56880 219 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 IRX1P78414 480 aaPredicted RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 HMGCS1Q01581 520 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 FGFBP1Q14512 234 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 CRYMQ14894 314 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 TSC22D1Q15714 1073 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ELOA3BQ3SY89 546 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 KHDRBS2Q5VWX1 349 aaKnown RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 CLEC2AQ6UVW9 174 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 FRA10AC1Q70Z53 315 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 GALNT12Q8IXK2 581 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ZNF619Q8N2I2 560 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ZNF525Q8N782 197 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 C17orf47Q8NEP4 570 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ELOA3Q8NG57 546 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 OR5M1Q8NGP8 315 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ANKRD49Q8WVL7 239 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ANKRD7Q92527 254 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ANP32BQ92688 251 aaKnown RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 WDR34Q96EX3 536 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 TACO1Q9BSH4 297 aaKnown RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 EFCAB11Q9BUY7 163 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ALG2Q9H553 416 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 XAB2Q9HCS7 855 aaKnown RBP10.52□□□□□ -0.73
CLK3-222ENST00000568232 PHF11Q9UIL8 331 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ZNF337Q9Y3M9 751 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 ASB4Q9Y574 426 aa10.52□□□□□ -0.73
CLK3-222ENST00000568232 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.51□□□□□ -0.73
CLK3-222ENST00000568232 UQCRHLA0A096LP55 91 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 EFCAB8A8MWE9 144 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 PLPP1O14494 284 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 PGRMC2O15173 223 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 TMPRSS11DO60235 418 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 RAMP1O60894 148 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 EEDO75530 441 aaKnown RBP10.51□□□□□ -0.73
CLK3-222ENST00000568232 BANF1O75531 89 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 S1PR1P21453 382 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 BUD31P41223 144 aaPredicted RBP10.51□□□□□ -0.73
CLK3-222ENST00000568232 CASP2P42575 452 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 MAGEA3P43357 314 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 SLC6A8P48029 635 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 HSPA7P48741 367 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 PLCXD2Q0VAA5 305 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 CHIT1Q13231 466 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 HIST2H2ACQ16777 129 aaPredicted RBP10.51□□□□□ -0.73
CLK3-222ENST00000568232 PDLIM3Q53GG5 364 aaPredicted RBP10.51□□□□□ -0.73
CLK3-222ENST00000568232 DEPDC1Q5TB30 811 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 HIST2H2AA3Q6FI13 130 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 FAM45BPQ6NSW5 357 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 PPP4R4Q6NUP7 873 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 MCUQ8NE86 351 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 FAM45AQ8TCE6 357 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 S100PBPQ96BU1 408 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 CMTM7Q96FZ5 175 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 ITPAQ9BY32 194 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 TRIM2Q9C040 744 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 FOLH1BQ9HBA9 442 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 EML4Q9HC35 981 aaKnown RBP10.51□□□□□ -0.73
CLK3-222ENST00000568232 CTNNAL1Q9UBT7 734 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 KCNS2Q9ULS6 477 aa10.51□□□□□ -0.73
CLK3-222ENST00000568232 MRPS18CQ9Y3D5 142 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms