RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZNF354BQ96LW1 612 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 DEPDC7Q96QD5 511 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 ZNF607Q96SK3 696 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 HDAC8Q9BY41 377 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 CA14Q9ULX7 337 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SNX7Q9UNH6 387 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 DIMT1Q9UNQ2 313 aaKnown RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 A0A1W2PP55 124 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 SEC14L5O43304 696 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 SCO2O43819 266 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 CDRT1O95170 752 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 CFL1P23528 166 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 KCNJ5P48544 419 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 MANFP55145 182 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 RPS26P62854 115 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 HYAL2Q12891 473 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TARDBPQ13148 414 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TBRG1Q3YBR2 411 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 FAM122CQ6P4D5 195 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 FAM131AQ6UXB0 335 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 HSDL2Q6YN16 418 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 DEF8Q6ZN54 512 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 MMP21Q8N119 569 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 PSD4Q8NDX1 1056 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 ZNF740Q8NDX6 193 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 SIMC1Q8NDZ2 872 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 POLDIP3Q9BY77 421 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 SEMA3GQ9NS98 782 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TXNL4BQ9NX01 149 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TMA7Q9Y2S6 64 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 MUC3AQ02505 3323 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 CCDC182A6NF36 153 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 FABP12A6NFH5 140 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 PI15O43692 258 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TMCC2O75069 709 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 CPEP16870 476 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TAS2R38P59533 333 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 MRPS21P82921 87 aaKnown RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 BNC1Q01954 994 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 MLF2Q15773 248 aaPredicted RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 AGBL4Q5VU57 503 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 ZNF776Q68DI1 518 aaPredicted RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 Q6ZS52 159 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 WDR53Q7Z5U6 358 aaPredicted RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 GALNT12Q8IXK2 581 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 KRT78Q8N1N4 520 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 HDDC3Q8N4P3 179 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 SLC7A13Q8TCU3 470 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 FUZQ9BT04 418 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 RSPO3Q9BXY4 272 aaPredicted RBP12.48□□□□□ -0.41
VPS4A-204ENST00000566354 NEUROD4Q9HD90 331 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 ABCB9Q9NP78 766 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 TVP23BQ9NYZ1 205 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 KLHL20Q9Y2M5 609 aa12.48□□□□□ -0.41
VPS4A-204ENST00000566354 A0A0C4DFX4 3053 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 A0A1W2PQL4 384 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-204ENST00000566354 PLD2O14939 933 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TLX2O43763 284 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TBX19O60806 448 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 RAB36O95755 333 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 C6P13671 934 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TNNI3P19429 210 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 CXCR2P25025 360 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 SLC9A3P48764 834 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TGM4P49221 684 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 MXD1Q05195 221 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 ZP2Q05996 745 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TAB1Q15750 504 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 PDZK1Q5T2W1 519 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 FAM180BQ6P0A1 224 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 PAQR6Q6TCH4 344 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TMEM92Q6UXU6 159 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 CD300LDQ6UXZ3 194 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 C6orf120Q7Z4R8 191 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 LMNTD1Q8N9Z9 388 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 DIRAS2Q96HU8 199 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 NELL2Q99435 816 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 MED18Q9BUE0 208 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 SORBS1Q9BX66 1292 aaKnown RBP12.47□□□□□ -0.41
VPS4A-204ENST00000566354 ZCCHC2Q9C0B9 1178 aaKnown RBP12.47□□□□□ -0.41
VPS4A-204ENST00000566354 NINQ8N4C6 2090 aa12.47□□□□□ -0.41
VPS4A-204ENST00000566354 TFECO14948 347 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 PDPK1O15530 556 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 NME6O75414 186 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 ADH1BP00325 375 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 TP53P04637 393 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 C5AR1P21730 350 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 NUDT1P36639 197 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 CBX5P45973 191 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 MAPK12P53778 367 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 DAB2P98082 770 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 HNRNPA0Q13151 305 aaKnown RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 NDUFA9Q16795 377 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 KLHL22Q53GT1 634 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 SLC35F1Q5T1Q4 408 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 DDI2Q5TDH0 399 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 UTS2BQ765I0 119 aa12.46□□□□□ -0.41
VPS4A-204ENST00000566354 BCDIN3DQ7Z5W3 292 aaKnown RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 RBM45Q8IUH3 476 aaKnown RBP12.46□□□□□ -0.41
VPS4A-204ENST00000566354 RDH10Q8IZV5 341 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms