RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TRIM42Q8IWZ5 723 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 SLC34A3Q8N130 599 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 NATD1Q8N6N6 113 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 ANKRD42Q8N9B4 389 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 FNDC5Q8NAU1 212 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 OR52N2Q8NGI0 321 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 SPPL2AQ8TCT8 520 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 GFM2Q969S9 779 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 OMA1Q96E52 524 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 ZBED6CLQ96FA7 236 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 ZNF597Q96LX8 424 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 AMDHD1Q96NU7 426 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 BTBD9Q96Q07 612 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PRPF18Q99633 342 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 DEFB127Q9H1M4 99 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 GLIPR2Q9H4G4 154 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 TMBIM4Q9HC24 238 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PLSCR2Q9NRY7 297 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 DDX18Q9NVP1 670 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 ARGLU1Q9NWB6 273 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 TUBA8Q9NY65 449 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 NKIRAS1Q9NYS0 192 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 MAPRE3Q9UPY8 281 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 EXO1Q9UQ84 846 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 EIF3LQ9Y262 564 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 DTX4Q9Y2E6 619 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 GPR55Q9Y2T6 319 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 A0A0G2JMM0 328 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 A0A1B0GTH9 108 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ATP6AP2A0A1C7CYW4 349 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 A0A1W2PPB8 328 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 A0A1W2PRS3 328 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 TMEM120BA0PK00 339 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 KIR3DP1A8MWS1 328 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 AKAP10O43572 662 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ITM2AO43736 263 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ATP6AP2O75787 350 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 WISP2O76076 250 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ABCB1P08183 1280 aaPredicted RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 ARRB2P32121 409 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 RPL14P50914 215 aaKnown RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 MANFP55145 182 aaKnown RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 MAGOHP61326 146 aaKnown RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 SNTA1Q13424 505 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 PDE7AQ13946 482 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 EFR3AQ14156 821 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 MPP2Q14168 576 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 CASP8Q14790 479 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ZNHIT3Q15649 155 aaPredicted RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 NNATQ16517 81 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 C3AR1Q16581 482 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 TMEM81Q6P7N7 255 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 TMEM107Q6UX40 140 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 RPTNQ6XPR3 784 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 TMEM64Q6YI46 380 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 PRR22Q8IZ63 422 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 TMEM251Q8N6I4 163 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 OR7G2Q8NG99 324 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 CEP70Q8NHQ1 597 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 FAM57AQ8TBR7 257 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 TMCO6Q96DC7 493 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ELP4Q96EB1 424 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 DTNBP1Q96EV8 351 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 VSTM2LQ96N03 204 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ANGPTL4Q9BY76 406 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 LDAHQ9H6V9 325 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 METTL7AQ9H8H3 244 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 FOLH1BQ9HBA9 442 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 ACSS1Q9NUB1 689 aaPredicted RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 ATAD3AQ9NVI7 634 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 BAIAP2L1Q9UHR4 511 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 SH3BGRL2Q9UJC5 107 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 MRTO4Q9UKD2 239 aaKnown RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 C19orf53Q9UNZ5 99 aaPredicted RBP12.3□□□□□ -0.44
CLK3-213ENST00000563842 ARHGAP21Q5T5U3 1957 aa12.3□□□□□ -0.44
CLK3-213ENST00000563842 CACNA1CQ13936 2221 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 OR14I1A6ND48 311 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 OR6C70A6NIJ9 312 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 SUSD5O60279 629 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 HCN1O60741 890 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 REM1O75628 298 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 PDE9AO76083 593 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 LRATO95237 230 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 IGHG3P01860 377 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 TPOP07202 933 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 BGNP21810 368 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 IL12BP29460 328 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 MC3RP41968 323 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 CASP3P42574 277 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 MAGEA5P43359 124 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 MASP1P48740 699 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 MAN2A2P49641 1150 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 SMSP52788 366 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 PNLIPRP2P54317 469 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 HSF1Q00613 529 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 ZNF155Q12901 538 aaPredicted RBP12.29□□□□□ -0.44
CLK3-213ENST00000563842 AGBL2Q5U5Z8 902 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 IL23RQ5VWK5 629 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 ATG16L1Q676U5 607 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 SLC30A6Q6NXT4 461 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms