RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CPPED1Q9BRF8 314 aaPredicted RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 SLC35A5Q9BS91 424 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 CRB3Q9BUF7 120 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 CNPPD1Q9BV87 410 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.86□□□□□ -1.63
SPG11-220ENST00000559933 POLR1BQ9H9Y6 1135 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 LIN28AQ9H9Z2 209 aaKnown RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 WDR41Q9HAD4 459 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 ADAP2Q9NPF8 381 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 MKKSQ9NPJ1 570 aaPredicted RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 FAM120CQ9NX05 1096 aaKnown RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 TAS2R1Q9NYW7 299 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 MAT2BQ9NZL9 334 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 ZNF282Q9UDV7 671 aaPredicted RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 IL17BQ9UHF5 180 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 C3orf18Q9UK00 162 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 WASF3Q9UPY6 502 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 PTRH2Q9Y3E5 179 aaKnown RBP4.86□□□□□ -1.63
SPG11-220ENST00000559933 PCDHGA3Q9Y5H0 932 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 KCNE3Q9Y6H6 103 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 ZNF780BQ9Y6R6 833 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 SPACA6W5XKT8 324 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 CEP295Q9C0D2 2601 aa4.86□□□□□ -1.63
SPG11-220ENST00000559933 NUP214P35658 2090 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 CFAP47Q6ZTR5 3102 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 IGLV3-12A0A075B6K2 115 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 A0A096LPI6 279 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 PRSS51A0A1B0GVH4 220 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 TCRBV16S1A1N1A0A5B0 115 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 PRORSD1PA6NEY8 169 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 TRABD2BA6NFA1 517 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 SLC22A31A6NKX4 558 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 VSTM2BA6NLU5 285 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 BBIP1A8MTZ0 92 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 A8MUI8 341 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 C17orf105B2RV13 164 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 C9J4A7 227 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 STMND1H3BQB6 276 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 TMX2-CTNND1H3BSU7 103 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 UPK1AO00322 258 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 RNASET2O00584 256 aaKnown RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 NME4O00746 187 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 TLX3O43711 291 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 OR10H2O60403 315 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 TBX19O60806 448 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 DNAJA2O60884 412 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 CTNSO60931 367 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 GUCY1B2O75343 617 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 KLF7O75840 302 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 SEC24DO94855 1032 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 KCNH1O95259 989 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 ANP32DO95626 131 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 DDAH2O95865 285 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 KLK3P07288 261 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 HEXBP07686 556 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 HBQ1P09105 142 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 ACP2P11117 423 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 ETFAP13804 333 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 LIFP15018 202 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 PORP16435 677 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 CSNK2A2P19784 350 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 TCN2P20062 427 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 AGXTP21549 392 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 CALB2P22676 271 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 SLC6A2P23975 617 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 RBMS1P29558 406 aaKnown RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 TLX1P31314 330 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 OTX2P32243 289 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 DLSTP36957 453 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 FOLR3P41439 243 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 FRKP42685 505 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 GSTM5P46439 218 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 STT3AP46977 705 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 MVDP53602 400 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 OR4D2P58180 307 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 PSME3P61289 254 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 IGLV3-21P80748 117 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 OCA2Q04671 838 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 FUT5Q11128 374 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 ZNF155Q12901 538 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 EIF3IQ13347 325 aaKnown RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 ART3Q13508 389 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 DNASE1L3Q13609 305 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 TP53BP2Q13625 1128 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 CEACAM7Q14002 265 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 LASP1Q14847 261 aaKnown RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 NSDHLQ15738 373 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 CEBPEQ15744 281 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 PRICKLE4Q2TBC4 344 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 SPDYE7PQ495Y7 208 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 LACTB2Q53H82 288 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 SFT2D3Q587I9 215 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 LRIF1Q5T3J3 769 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 CCNJQ5T5M9 372 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 FHL5Q5TD97 284 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 YOD1Q5VVQ6 348 aaPredicted RBP4.85□□□□□ -1.63
SPG11-220ENST00000559933 NANOGP8Q6NSW7 305 aa4.85□□□□□ -1.63
SPG11-220ENST00000559933 ZNF517Q6ZMY9 492 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms