RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 LSAMPQ13449 338 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 GPR19Q15760 415 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 SYPL1Q16563 259 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ZNF750Q32MQ0 723 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 SLC5A8Q8N695 610 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 OR5D16Q8NGK9 328 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ELP4Q96EB1 424 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 C10orf90Q96M02 699 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 COL21A1Q96P44 957 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 LYRM4Q9HD34 91 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 KCMF1Q9P0J7 381 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 KCND3Q9UK17 655 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 TPRKBQ9Y3C4 175 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 SPACA6W5XKT8 324 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ENO4A6NNW6 628 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 H0YGG7 62 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 J3KTA2 159 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ASNA1O43681 348 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 RECKO95980 971 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ALOX12P18054 663 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 CD1CP29017 333 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 LIM2P55344 173 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ARF3P61204 181 aaPredicted RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 RPP38P78345 283 aaKnown RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 CCL7P80098 99 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 PMS2P3Q13401 168 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 PUM1Q14671 1186 aaKnown RBP eCLIP16.68■□□□□ 0.26
SNX1-208ENST00000559844 LASP1Q14847 261 aaKnown RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 LAIR2Q6ISS4 152 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 USP53Q70EK8 1073 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 CLVS1Q8IUQ0 354 aaPredicted RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 LRRC25Q8N386 305 aaPredicted RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 NUP43Q8NFH3 380 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 GPR32P1Q8NGA4 272 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 OR52J3Q8NH60 311 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ZNF420Q8TAQ5 688 aaPredicted RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 PHF10Q8WUB8 498 aaKnown RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 HRASLS5Q96KN8 279 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 CXorf21Q9HAI6 301 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 SCN3BQ9NY72 215 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 DAPP1Q9UN19 280 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 A0A0G2JPF8 293 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 A0A1W2PQM1 296 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 PRAMEF27A3QJZ7 478 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 HNRNPCL2B2RXH8 293 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 HNRNPCL3B7ZW38 293 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 HNRNPCL4P0DMR1 293 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 AGXTP21549 392 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 LSSP48449 732 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 PPP1CAP62136 330 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 RAB39AQ14964 217 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 DEFB134Q4QY38 66 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 COLEC12Q5KU26 742 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 FRMPD2BQ6IN97 320 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 TAGAPQ8N103 731 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 OR4K14Q8NGD5 310 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 OR9A2Q8NGT5 310 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 KLHL6Q8WZ60 621 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 KLHL25Q9H0H3 589 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 LRRN3Q9H3W5 708 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 CALML5Q9NZT1 146 aa16.67■□□□□ 0.26
SNX1-208ENST00000559844 MDC1Q14676 2089 aaKnown RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 LOC105369274A0A096LPK9 316 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 LOC102723532A0A0G2JNH3 316 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 SLC30A4O14863 429 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 TM4SF5O14894 197 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 CSRP1P21291 193 aaKnown RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 CSF2RBP32927 897 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 MC3RP41968 323 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 SMIM11AP58511 58 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 CSNK2BP67870 215 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 TUBA3CQ13748 450 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 RUNX2Q13950 521 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 MAD2L1BPQ15013 274 aaPredicted RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 NEDD8Q15843 81 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 SPARTQ8N0X7 666 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 OR4N4Q8N0Y3 316 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 BPIFB6Q8NFQ5 453 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 CNIH3Q8TBE1 160 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 FAM122AQ96E09 287 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 ALPK1Q96QP1 1244 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 ATXN7L1Q9ULK2 861 aaPredicted RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 LIPT1Q9Y234 373 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 NAALAD2Q9Y3Q0 740 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 SLC22A7Q9Y694 548 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 MRPS14O60783 128 aaKnown RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 RFPL3O75679 317 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 PVRP15151 417 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 GFERP55789 205 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 ROR2Q01974 943 aaKnown RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 GANABQ14697 944 aaKnown RBP16.66■□□□□ 0.26
SNX1-208ENST00000559844 DGLUCYQ7Z3D6 616 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 GLRX5Q86SX6 157 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 MPP4Q96JB8 637 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 OR7D2Q96RA2 312 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 NODALQ96S42 347 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 NUDT22Q9BRQ3 303 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 SEMA6CQ9H3T2 930 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 FANCEQ9HB96 536 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 POMT2Q9UKY4 750 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms