RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PDIA5Q14554 519 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 CD226Q15762 336 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 ZKSCAN8Q15776 578 aaPredicted RBP2.23□□□□□ -2.05
SCFD1-218ENST00000556256 LRIT3Q3SXY7 679 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 CCDC40Q4G0X9 1142 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 AGKQ53H12 422 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 IL23RQ5VWK5 629 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 LIPKQ5VXJ0 399 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 CWC27Q6UX04 472 aaKnown RBP2.23□□□□□ -2.05
SCFD1-218ENST00000556256 DPY19L2P2Q6ZN68 376 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 RANBP3LQ86VV4 465 aaPredicted RBP2.23□□□□□ -2.05
SCFD1-218ENST00000556256 GPATCH11Q8N954 259 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 LEMD2Q8NC56 503 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 BEST4Q8NFU0 473 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 OR56B1Q8NGI3 324 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 U2AF1L4Q8WU68 220 aaKnown RBP2.23□□□□□ -2.05
SCFD1-218ENST00000556256 ITLN1Q8WWA0 313 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 BIRC7Q96CA5 298 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 C14orf79Q96F83 325 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 FAM111AQ96PZ2 611 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 NDUFAF3Q9BU61 184 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 RBM24Q9BX46 236 aaKnown RBP2.23□□□□□ -2.05
SCFD1-218ENST00000556256 GPR174Q9BXC1 333 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 ATG10Q9H0Y0 220 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 SP140LQ9H930 580 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 NRN1Q9NPD7 142 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.23□□□□□ -2.05
SCFD1-218ENST00000556256 ZNF581Q9P0T4 197 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 MBD2Q9UBB5 411 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 IL20RAQ9UHF4 553 aa2.23□□□□□ -2.05
SCFD1-218ENST00000556256 IGHV3OR16-12A0A075B7B8 117 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 A0A1B0GTH9 108 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 FAM168BA1KXE4 195 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 KRT87PA6NCN2 255 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 CYB561D2O14569 222 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 MCF2LO15068 1137 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 PRPSAP2O60256 369 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 NDUFA7O95182 113 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 MT-ATP6P00846 226 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 TGFAP01135 160 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 IGHV3-9P01782 118 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 MT-ND1P03886 318 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 IGKV3-11P04433 115 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 PROS1P07225 676 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 CCDC192P0DO97 292 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 CCNA2P20248 432 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 IGFBP5P24593 272 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 RPA1P27694 616 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 TMOD1P28289 359 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 SAA4P35542 130 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 ELK3P41970 407 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 MATKP42679 507 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 NUMBP49757 651 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 VCPP55072 806 aaKnown RBP2.22□□□□□ -2.05
SCFD1-218ENST00000556256 HAND2P61296 217 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 MYBPC1Q00872 1141 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 ZNF85Q03923 595 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 SNX1Q13596 522 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 TMEM44Q2T9K0 475 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 NHLRC3Q5JS37 347 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 TOR1AIP1Q5JTV8 583 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 ATAD3CQ5T2N8 411 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 TAF3Q5VWG9 929 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 LEMD1Q68G75 181 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 REP15Q6BDI9 236 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 ZCCHC12Q6PEW1 402 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 ADAMTSL5Q6ZMM2 481 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 STOX1Q6ZVD7 989 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 PAQR9Q6ZVX9 377 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 MLKLQ8NB16 471 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 FAM71CQ8NEG0 241 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 PHYHIPQ92561 330 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 BADQ92934 168 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 DLX4Q92988 240 aaPredicted RBP2.22□□□□□ -2.05
SCFD1-218ENST00000556256 NMNAT2Q9BZQ4 307 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 C1orf21Q9H246 121 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 AMBNQ9NP70 447 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 CLEC5AQ9NY25 188 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 EIF3KQ9UBQ5 218 aaKnown RBP2.22□□□□□ -2.05
SCFD1-218ENST00000556256 PURGQ9UJV8 347 aaKnown RBP2.22□□□□□ -2.05
SCFD1-218ENST00000556256 NUDCQ9Y266 331 aa2.22□□□□□ -2.05
SCFD1-218ENST00000556256 FER1L5A0AVI2 2057 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 NPIPA5A0A0B4J1W7 369 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 IGKV6-21A0A0C4DH24 114 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 RNF222A6NCQ9 220 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 FBLL1A6NHQ2 334 aaKnown RBP2.21□□□□□ -2.06
SCFD1-218ENST00000556256 NPIPA5E9PKD4 350 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 E9PMD0 336 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.21□□□□□ -2.06
SCFD1-218ENST00000556256 SGK494L7N484 410 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 HDAC3O15379 428 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 SSX5O60225 188 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 ECDO95905 644 aaPredicted RBP2.21□□□□□ -2.06
SCFD1-218ENST00000556256 HOXB7P09629 217 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 FUT1P19526 365 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 DNAJB1P25685 340 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 MAPK3P27361 379 aaPredicted RBP2.21□□□□□ -2.06
SCFD1-218ENST00000556256 PTPN6P29350 595 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 PRDX2P32119 198 aa2.21□□□□□ -2.06
SCFD1-218ENST00000556256 ZNF33BQ06732 778 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms