RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 IGFBP5P24593 272 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 UGT1A3P35503 534 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 ACVR1BP36896 505 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 RAG2P55895 527 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 STX1BP61266 288 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 GNB2P62879 340 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 NPRL3Q12980 569 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 MSLNQ13421 630 aaPredicted RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 SCARB2Q14108 478 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 RCN2Q14257 317 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 SMC1AQ14683 1233 aaKnown RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 DCAF4L1Q3SXM0 396 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 MEDAGQ5VYS4 303 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 ATRAIDQ6UW56 229 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 ERI1Q8IV48 349 aaKnown RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 MKXQ8IYA7 352 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 RAB39BQ96DA2 213 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 SLC25A38Q96DW6 304 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 DHTKD1Q96HY7 919 aaPredicted RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 ZNF184Q99676 751 aaPredicted RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 OPN3Q9H1Y3 402 aaPredicted RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 ZNF702PQ9H963 129 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 CNIH4Q9P003 139 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 NARFQ9UHQ1 456 aa2.47□□□□□ -2.01
SCFD1-216ENST00000555550 FOXA2Q9Y261 457 aaPredicted RBP2.47□□□□□ -2.01
SCFD1-216ENST00000555550 SYNJ2O15056 1496 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 ZNF320A2RRD8 509 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 PANO1I0J062 215 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 ECDO95905 644 aaPredicted RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 SERPINF2P08697 491 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 HIST1H2AGP0C0S8 130 aaPredicted RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 TCF7P36402 384 aaPredicted RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 RIPPLY3P57055 190 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 PUDPQ08623 228 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 EIF2B1Q14232 305 aaKnown RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 EPC2Q52LR7 807 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 FAM133BQ5BKY9 247 aaKnown RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 HIST2H2AA3Q6FI13 130 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 PRR5LQ6MZQ0 368 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 CWC27Q6UX04 472 aaKnown RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 TMEM179BQ7Z7N9 219 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 NAT8LQ8N9F0 302 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 Q8N9L7 120 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 FNDC8Q8TC99 324 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 HIST1H2ACQ93077 130 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 DPH7Q9BTV6 452 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 EHD1Q9H4M9 534 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 STX8Q9UNK0 236 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 ENTPD4Q9Y227 616 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 MRPS2Q9Y399 296 aaKnown RBP2.46□□□□□ -2.02
SCFD1-216ENST00000555550 CHD4Q14839 1912 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 LRRK1Q38SD2 2015 aa2.46□□□□□ -2.02
SCFD1-216ENST00000555550 ARHGAP23Q9P227 1491 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 SMIM30A4D0T7 59 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 SLC28A1O00337 649 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 ZNF263O14978 683 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 HOXB7P09629 217 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 PTBP1P26599 531 aaKnown RBP eCLIP2.45□□□□□ -2.02
SCFD1-216ENST00000555550 UCP2P55851 309 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 MECOMQ03112 1051 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 ORC2Q13416 577 aaPredicted RBP2.45□□□□□ -2.02
SCFD1-216ENST00000555550 IL18R1Q13478 541 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 LGSNQ5TDP6 509 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 C11orf88Q6PI97 169 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 PRSS42Q7Z5A4 293 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 NFAM1Q8NET5 270 aaPredicted RBP2.45□□□□□ -2.02
SCFD1-216ENST00000555550 OR4F17Q8NGA8 305 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 FIBINQ8TAL6 211 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 ACCSQ96QU6 501 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 OR4F4Q96R69 305 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 OSBPL8Q9BZF1 889 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 TSPYL1Q9H0U9 437 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 ABCG4Q9H172 646 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 HPS4Q9NQG7 708 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 EXOSC3Q9NQT5 275 aaKnown RBP2.45□□□□□ -2.02
SCFD1-216ENST00000555550 MAD2L2Q9UI95 211 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 FBXW2Q9UKT8 454 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 LIPT1Q9Y234 373 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 SNX5Q9Y5X3 404 aa2.45□□□□□ -2.02
SCFD1-216ENST00000555550 RAI1Q7Z5J4 1906 aaPredicted RBP2.44□□□□□ -2.02
SCFD1-216ENST00000555550 H0Y626 953 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 WWP2O00308 870 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 OR7A17O14581 309 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 MAGEB4O15481 346 aaPredicted RBP2.44□□□□□ -2.02
SCFD1-216ENST00000555550 IGHV3-23P01764 117 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 UGT1A6P19224 532 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 FUT3P21217 361 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 FCARP24071 287 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 NSFP46459 744 aaKnown RBP2.44□□□□□ -2.02
SCFD1-216ENST00000555550 NOP14P78316 857 aaKnown RBP2.44□□□□□ -2.02
SCFD1-216ENST00000555550 BCL2L1Q07817 233 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 HERPUD1Q15011 391 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 CLPPQ16740 277 aaPredicted RBP2.44□□□□□ -2.02
SCFD1-216ENST00000555550 SPATA46Q5T0L3 261 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 NKAIN2Q5VXU1 208 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 B3GLCTQ6Y288 498 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 MLKLQ8NB16 471 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 GDAP1Q8TB36 358 aa2.44□□□□□ -2.02
SCFD1-216ENST00000555550 DNAJA3Q96EY1 480 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms