RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 OPTNQ96CV9 577 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 CDHR1Q96JP9 859 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 RPGRIP1Q96KN7 1286 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 FUNDC2Q9BWH2 189 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 NMUR1Q9HB89 426 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 NINJ2Q9NZG7 142 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 ODF2LQ9ULJ1 636 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 ACACBO00763 2458 aa4.05□□□□□ -1.76
LIMA1-205ENST00000550592 RTL9Q8NET4 1388 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 ZFHX2Q9C0A1 2572 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-205ENST00000550592 NDUFAF8A1L188 74 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 LRP3O75074 770 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 FHP07954 510 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 TRIM49P0CI25 452 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 TRIM49CP0CI26 452 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 CCDC192P0DO97 292 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 SFNP31947 248 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 LIMK2P53671 638 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 EXOSC7Q15024 291 aaKnown RBP4.04□□□□□ -1.76
LIMA1-205ENST00000550592 ZNF146Q15072 292 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 TRADDQ15628 312 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 GPAT3Q53EU6 434 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 RTL6Q6ICC9 239 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 TAF8Q7Z7C8 310 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 CARM1Q86X55 608 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 PARP8Q8N3A8 854 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 Q8NBF4 154 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 P3H4Q92791 437 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 MRPL24Q96A35 216 aaKnown RBP4.04□□□□□ -1.76
LIMA1-205ENST00000550592 RUNDC3BQ96NL0 473 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 JPH2Q9BR39 696 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-205ENST00000550592 DCTN5Q9BTE1 182 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 KRTAP2-2Q9BYT5 123 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 HSD3B7Q9H2F3 369 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 HOMER3Q9NSC5 361 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 NUDT4Q9NZJ9 180 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 NDUFA13Q9P0J0 144 aa4.04□□□□□ -1.76
LIMA1-205ENST00000550592 DIMT1Q9UNQ2 313 aaKnown RBP4.04□□□□□ -1.76
LIMA1-205ENST00000550592 KMT2BQ9UMN6 2715 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 TRBV5-4A0A0C4DH59 114 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 KRT87PA6NCN2 255 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 CFAP73A6NFT4 308 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ARHGAP42A6NI28 874 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ARHGEF33A8MVX0 844 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 EPM2AB3EWF7 344 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 H7C423 109 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ARPC1BO15143 372 aaKnown RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 PRPSAP2O60256 369 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 HIST1H2AGP0C0S8 130 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 PCP11498 1178 aaKnown RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ETS1P14921 441 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 MARCKSP29966 332 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 CCL11P51671 97 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ATXN3P54252 364 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 BPIFB3P59826 476 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 RPL27P61353 136 aaKnown RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 CDKL1Q00532 357 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 FKBP3Q00688 224 aaKnown RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 SLC17A1Q14916 467 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 P2RY14Q15391 338 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 LRRC26Q2I0M4 334 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 MS4A18Q3C1V0 323 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 CCDC40Q4G0X9 1142 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 C14orf177Q52M58 125 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 TAF1BQ53T94 588 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 C2CD6Q53TS8 623 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 TOR1AIP1Q5JTV8 583 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 WDR88Q6ZMY6 472 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 LEMD2Q8NC56 503 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 LRRC15Q8TF66 581 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 PCNPQ8WW12 178 aaKnown RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 HIST1H2ACQ93077 130 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 NSMCE2Q96MF7 247 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 COQ7Q99807 217 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 FTHL17Q9BXU8 183 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 DEFB129Q9H1M3 183 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 C1orf21Q9H246 121 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 WDR41Q9HAD4 459 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 THYN1Q9P016 225 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ERVK-18Q9QC07 812 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 SPASTQ9UBP0 616 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 COPS7AQ9UBW8 275 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 PIN4Q9Y237 131 aaKnown RBP4.03□□□□□ -1.76
LIMA1-205ENST00000550592 FAM208BQ5VWN6 2430 aa4.03□□□□□ -1.76
LIMA1-205ENST00000550592 ABCC12Q96J65 1359 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 LAMB1P07942 1786 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 ABCC4O15439 1325 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 UBE4BO95155 1302 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 CFAP54Q96N23 3096 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 CACNA1HO95180 2353 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 A0A0U1RRA0 63 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 ZNF724A8MTY0 619 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 FBP2O00757 339 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 TSPAN2O60636 221 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 REC8O95072 547 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 SYNGR4O95473 234 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 MAPK3P27361 379 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-205ENST00000550592 ACADSBP45954 432 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms