RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 HEY2Q9UBP5 337 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 ZNF639Q9UID6 485 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 FBXL2Q9UKC9 423 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 CES1P1Q9UKY3 287 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 DLGAP4Q9Y2H0 992 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 ANGPTL3Q9Y5C1 460 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 PRR14LQ5THK1 2151 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 USF3Q68DE3 2245 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 EFCAB8A8MWE9 144 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 SEMA3DO95025 777 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 SRD5A2P31213 254 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 UGT2B10P36537 528 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 PTH2RP49190 550 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 HMGCS1Q01581 520 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 DUSP2Q05923 314 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 KRTAP1-1Q07627 177 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 MAP4K2Q12851 820 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 C6orf163Q5TEZ5 329 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 C20orf204Q6ZNR8 217 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 RAPH1Q70E73 1250 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 CYS1Q717R9 158 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 BTLAQ7Z6A9 289 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 PLCZ1Q86YW0 608 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 CENPLQ8N0S6 344 aaPredicted RBP16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 NANOS1Q8WY41 292 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 FAM111AQ96PZ2 611 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 MED18Q9BUE0 208 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 BRINP2Q9C0B6 783 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 OPN3Q9H1Y3 402 aaPredicted RBP16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 IPPKQ9H8X2 491 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 BCAP29Q9UHQ4 241 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 PLLPQ9Y342 182 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 SNX24Q9Y343 169 aa16.11■□□□□ 0.17
CLSTN3-214ENST00000542663 SONP18583 2426 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 ACOX3O15254 700 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 CBX7O95931 251 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 CRHP06850 196 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 TCP1P17987 556 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 SPRP35270 261 aaPredicted RBP16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 KIR2DL2P43627 348 aaPredicted RBP16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 GPX6P59796 221 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 IRF9Q00978 393 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 GTF2H2Q13888 395 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 PFKFB4Q16877 469 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 GTF2H2CQ6P1K8 395 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 AAGABQ6PD74 315 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 ZNF550Q7Z398 422 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 GOLGA7Q7Z5G4 137 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 TBC1D1Q86TI0 1168 aaPredicted RBP16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 CREG2Q8IUH2 290 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 CNEP1R1Q8N9A8 125 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 KCTD4Q8WVF5 259 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 PGM2Q96G03 612 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 SAYSD1Q9NPB0 183 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 CFL2Q9Y281 166 aa16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 MRPS18CQ9Y3D5 142 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-214ENST00000542663 STAB1Q9NY15 2570 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 C17orf51A8MQB3 221 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 ZIC3O60481 467 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 CGAP01215 116 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 ATP1B1P05026 303 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 KLK1P06870 262 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 EMDP50402 254 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 ALDH18A1P54886 795 aaKnown RBP16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 B3GALT5-AS1P59052 145 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 CAPRIN1Q14444 709 aaKnown RBP16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 SLMAPQ14BN4 828 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 GRTP1Q5TC63 336 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 SLC48A1Q6P1K1 146 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 C3orf62Q6ZUJ4 267 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 ADCY4Q8NFM4 1077 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 RHEBL1Q8TAI7 183 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 SFXN2Q96NB2 322 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 CDK15Q96Q40 435 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 SERPINI1Q99574 410 aa16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 MRPL1Q9BYD6 325 aaKnown RBP16.09■□□□□ 0.17
CLSTN3-214ENST00000542663 OR6C70A6NIJ9 312 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 SLC22A20A6NK97 555 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 SYCE1LA8MT33 242 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 OR7A17O14581 309 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 TO15178 435 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 CRLF1O75462 422 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 SIX3O95343 332 aaPredicted RBP16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 POU2F1P14859 743 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 PAX1P15863 534 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 DRD5P21918 477 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 TCEA1P23193 301 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 CRABP2P29373 138 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 FEN1P39748 380 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 PPICP45877 212 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 CLDN15P56746 228 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 BCL2A1Q16548 175 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 TRMT12Q53H54 448 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 OR5M10Q6IEU7 315 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 OR2A2Q6IF42 318 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 P4HA3Q7Z4N8 544 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 CTAGE3PQ8IX95 158 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 OR52R1Q8NGF1 315 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 RNF138Q8WVD3 245 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 FIG4Q92562 907 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms