RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 MTO1Q9Y2Z2 717 aaKnown RBP10.5□□□□□ -0.73
CLSTN3-209ENST00000539982 ANK3Q12955 4377 aaKnown RBP10.5□□□□□ -0.73
CLSTN3-209ENST00000539982 ABCA1O95477 2261 aa10.5□□□□□ -0.73
CLSTN3-209ENST00000539982 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PRAMEF25A6NGN4 478 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 K7EPI3 171 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PGRMC1O00264 195 aaKnown RBP10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 ACOX3O15254 700 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PHF1O43189 567 aaPredicted RBP10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 CD5LO43866 347 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 ZIC3O60481 467 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 UGT2B11O75310 529 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 THBDP07204 575 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PPP3CBP16298 524 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 EPB42P16452 691 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 NT5EP21589 574 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 IVDP26440 423 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 CNTFP26441 200 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 IDUAP35475 653 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 HMGCS1Q01581 520 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PLCXD2Q0VAA5 305 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 CUL3Q13618 768 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 VEZF1Q14119 521 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 FGFBP1Q14512 234 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 ETFDHQ16134 617 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 NNATQ16517 81 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 C6orf163Q5TEZ5 329 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 SYT10Q6XYQ8 523 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 REPS1Q96D71 796 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 TSPAN17Q96FV3 270 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 KLHL4Q9C0H6 718 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 CAB39LQ9H9S4 337 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 NSMCE4AQ9NXX6 385 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PSD3Q9NYI0 1048 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 OPTCQ9UBM4 332 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 FBXL2Q9UKC9 423 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 PCDHGA11Q9Y5H2 935 aa10.49□□□□□ -0.73
CLSTN3-209ENST00000539982 GOLGA6L10A0A0M3HER8 536 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 HS3ST1O14792 307 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 PHGDHO43175 533 aaKnown RBP10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 TNFRSF21O75509 655 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 PLAUP00749 431 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 PEPDP12955 493 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 CPMP14384 443 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 PORP16435 677 aaPredicted RBP10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 DRD5P21918 477 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 EEFSECP57772 596 aaKnown RBP10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 RPS4XP62701 263 aaKnown RBP10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 SIRPAP78324 504 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 PHEXP78562 749 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 MAP4K2Q12851 820 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 MORF4L2Q15014 288 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 CHRFAM7AQ494W8 412 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 C10orf62Q5T681 223 aaPredicted RBP10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 LIPJQ5W064 366 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 NUDT13Q86X67 352 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 ANKMY2Q8IV38 441 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 STAG3L4Q8TBR4 150 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 FIG4Q92562 907 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 TMCO6Q96DC7 493 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 TRMT61AQ96FX7 289 aaKnown RBP10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 UBXN10Q96LJ8 280 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 TMEM204Q9BSN7 226 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 ITPAQ9BY32 194 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 RNF122Q9H9V4 155 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 BCAP29Q9UHQ4 241 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 DKKL1Q9UK85 242 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 PROCRQ9UNN8 238 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 LAMP3Q9UQV4 416 aa10.48□□□□□ -0.73
CLSTN3-209ENST00000539982 OR6C70A6NIJ9 312 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 H0YIV9 168 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 OVOL3O00110 214 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 TO15178 435 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 ABCB7O75027 752 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 GBAP04062 536 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 STMN1P16949 149 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 DPP4P27487 766 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 CASQ1P31415 396 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 PPICP45877 212 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 ARL4CP56559 192 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 CLDN15P56746 228 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 B3GALT5-AS1P59052 145 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 MGAT2Q10469 447 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 PRICKLE4Q2TBC4 344 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 OR5M10Q6IEU7 315 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 FAM111BQ6SJ93 734 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 ISCA2Q86U28 154 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 MYLK4Q86YV6 388 aaPredicted RBP10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 UBQLNLQ8IYU4 475 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 SLC35F6Q8N357 371 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 KIF18AQ8NI77 898 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 ACTRT1Q8TDG2 376 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 UBTD2Q8WUN7 234 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 EXT2Q93063 718 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 PLPPR2Q96GM1 343 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 COL21A1Q96P44 957 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 LRRC1Q9BTT6 524 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 NUDT4Q9NZJ9 180 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 EHD3Q9NZN3 535 aa10.47□□□□□ -0.73
CLSTN3-209ENST00000539982 ZNF639Q9UID6 485 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms