RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	EXPH5	Q8NEV8	1989 aa		13.85	□□□□□ -0.19
CPSF1-208	ENST00000532560	SVIL	O95425	2214 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	POLE	Q07864	2286 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	SLCO1B7	G3V0H7	640 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	TP53I11	O14683	189 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	HDAC3	O15379	428 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	PPM1B	O75688	479 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	G6PD	P11413	515 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	NAGA	P17050	411 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	CNR1	P21554	472 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	ABCD3	P28288	659 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	SRSF11	Q05519	484 aa	Known RBP	13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	HSPB3	Q12988	150 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	MLC1	Q15049	377 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	NNAT	Q16517	81 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	KRTCAP3	Q53RY4	240 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	OGFOD2	Q6N063	350 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	GFRAL	Q6UXV0	394 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	TMEM64	Q6YI46	380 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	BNC2	Q6ZN30	1099 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	FAM47E	Q6ZV65	393 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	ZNF551	Q7Z340	670 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	RIMKLA	Q8IXN7	391 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	CCDC197	Q8NCU1	140 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	ZNF75CP	Q92670	426 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	ELP4	Q96EB1	424 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	SECISBP2	Q96T21	854 aa	Known RBP	13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	ATAD3A	Q9NVI7	634 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	SEC14L3	Q9UDX4	400 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	MARCO	Q9UEW3	520 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	MAPRE3	Q9UPY8	281 aa		13.84	□□□□□ -0.19
CPSF1-208	ENST00000532560	PINLYP	A6NC86	204 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	ANKRD33B	A6NCL7	494 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	TRPC5OS	A6NMA1	111 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560		G3V3Y1	287 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	ACOT7	O00154	380 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	UPK1A	O00322	258 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	SDHD	O14521	159 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	TFEC	O14948	347 aa	Predicted RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	ERN1	O75460	977 aa	Known RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	UNC5C	O95185	931 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CT45A8	P0DMV1	189 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CT45A9	P0DMV2	189 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	LBP	P18428	481 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	GPC1	P35052	558 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	RFC3	P40938	356 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CLDN8	P56748	225 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	FBXW4	P57775	412 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	KCNK10	P57789	538 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	PLCXD2	Q0VAA5	305 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF155	Q12901	538 aa	Predicted RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CT45A2	Q5DJT8	189 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	TBCEL	Q5QJ74	424 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CPTP	Q5TA50	214 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	NPSR1	Q6W5P4	371 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	RGS9BP	Q6ZS82	235 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CAMKMT	Q7Z624	323 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC34A3	Q8N130	599 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	FAM26E	Q8N5C1	309 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	KRTCAP2	Q8N6L1	136 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	NATD1	Q8N6N6	113 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR7A2P	Q8NGA2	310 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	PRR7	Q8TB68	274 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	SPPL2A	Q8TCT8	520 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	OMA1	Q96E52	524 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF317	Q96PQ6	595 aa	Predicted RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	PRPF18	Q99633	342 aa	Known RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	TTTY12	Q9BZ98	90 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	NTM	Q9P121	344 aa		13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	CNOT11	Q9UKZ1	510 aa	Known RBP	13.83	□□□□□ -0.2
CPSF1-208	ENST00000532560	NPIPA5	E9PKD4	350 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	WISP2	O76076	250 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	GLS	O94925	669 aa	Predicted RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	ABCB1	P08183	1280 aa	Predicted RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	LAMP1	P11279	417 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	PIGA	P37287	484 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	DNASE1L1	P49184	302 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	CDK9	P50750	372 aa	Known RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	DIO3	P55073	304 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	MANF	P55145	182 aa	Known RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	RPP38	P78345	283 aa	Known RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	RBPJ	Q06330	500 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	FOXO1	Q12778	655 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	HYAL4	Q2M3T9	481 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	PRAMEF20	Q5VT98	475 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	TMEM81	Q6P7N7	255 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	PIGW	Q7Z7B1	504 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC22A16	Q86VW1	577 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	WDR75	Q8IWA0	830 aa	Known RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	PRR22	Q8IZ63	422 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR5M3	Q8NGP4	307 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	PIWIL2	Q8TC59	973 aa	Known RBP	13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	COQ8B	Q96D53	544 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	C7orf26	Q96N11	449 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZDHHC11	Q9H8X9	412 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms