RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PFKLP17858 780 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 EFNA1P20827 205 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 GKP32189 559 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 GSTM4Q03013 218 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 MLLT11Q13015 90 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 VEZF1Q14119 521 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF266Q14584 549 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 MELKQ14680 651 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ARHGAP19Q14CB8 494 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ADGRF1Q5T601 910 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 OR10K2Q6IF99 312 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 BRAT1Q6PJG6 821 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 C4orf32Q8N8J7 132 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 OR5AK2Q8NH90 309 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PMEPA1Q969W9 287 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PGAM5Q96HS1 289 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 IQSEC2Q5JU85 1478 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 BTBD17A6NE02 478 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 SOCS2O14508 198 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 GPRIN2O60269 458 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 ACTL6BO94805 426 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 C6orf47O95873 294 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 AK4P27144 223 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 S100A11P31949 105 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 STC1P52823 247 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 PLA2G7Q13093 441 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 PAFAH1B3Q15102 231 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 BRICD5Q6PL45 260 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 GALNT10Q86SR1 603 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 FAM124AQ86V42 546 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 AKT1S1Q96B36 256 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 SLCO5A1Q9H2Y9 848 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 SLAMF7Q9NQ25 335 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 C19orf25Q9UFG5 118 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 NDRG3Q9UGV2 375 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 FAM96BQ9Y3D0 163 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 LOC105369274A0A096LPK9 316 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 SMIM30A4D0T7 59 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 CPED1A4D0V7 1026 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 LRP5LA4QPB2 252 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 AGPAT2O15120 278 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 FHP07954 510 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 DRD2P14416 443 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 MAOBP27338 520 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 NDUFA6P56556 154 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 CLDN8P56748 225 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 MALLQ13021 153 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC17A1Q14916 467 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 RSU1Q15404 277 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 OR4N4Q8N0Y3 316 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 HORMAD2Q8N7B1 307 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF559Q9BR84 538 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 TTPALQ9BTX7 342 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 OPA3Q9H6K4 179 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 BRF2Q9HAW0 419 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 KLK4Q9Y5K2 254 aa10.71□□□□□ -0.69
LIMCH1-217ENST00000512946 CNTNAP1P78357 1384 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 EMC8O43402 210 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 MMP7P09237 267 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 JUPP14923 745 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 LCN6P62502 163 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 TARBP2Q15633 366 aaKnown RBP10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 CD276Q5ZPR3 534 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 SYT13Q7L8C5 426 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 LRRC56Q8IYG6 542 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 CLDN22Q8N7P3 220 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 OR5AK3PQ8NH89 298 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 ANGPTL6Q8NI99 470 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 ZFP90Q8TF47 636 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 PCDHGC4Q9Y5F7 938 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 TULP4Q9NRJ4 1543 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 FTCDNL1E5RQL4 147 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 E7ESA3 106 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 PAX6P26367 422 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 ECI1P42126 302 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 BRCC3P46736 316 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 PPT1P50897 306 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 CLRN1P58418 232 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 ERVFC1P60507 584 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 H3F3AP84243 136 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 MGAT3Q09327 533 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 SCAPQ12770 1279 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 IL17AQ16552 155 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 NOXRED1Q6NXP6 359 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 ASB13Q8WXK3 278 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 RNF170Q96K19 258 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 C12orf10Q9HB07 376 aa10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 GMPR2Q9P2T1 348 aaKnown RBP10.71□□□□□ -0.7
LIMCH1-217ENST00000512946 MAGI3Q5TCQ9 1506 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 MAP3K4Q9Y6R4 1608 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TTC24A2A3L6 582 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 OTOL1A6NHN0 477 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 CD48P09326 243 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 PSMB1P20618 241 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 LAP3P28838 519 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 PPP1R3AQ16821 1122 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 METTL2BQ6P1Q9 378 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 B3GLCTQ6Y288 498 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 LYSMD3Q7Z3D4 306 aa10.7□□□□□ -0.7
LIMCH1-217ENST00000512946 TAC4Q86UU9 113 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms