RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 KHDRBS3O75525 346 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ERAL1O75616 437 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 IDH1O75874 414 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ATP5HO75947 161 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 KLHL2O95198 593 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TRIM16O95361 564 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MOCS3O95396 460 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 C22orf31O95567 290 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 KRT75O95678 551 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 BAG2O95816 211 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 BAG3O95817 575 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 APOA4P06727 396 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ASGR1P07306 291 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CAPN1P07384 714 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 KRT7P08729 469 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ALOX5P09917 674 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 HSMCR30P0CW71 290 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SAGP10523 405 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 EPB41P11171 864 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ICAM2P13598 275 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 GFAPP14136 432 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CPA3P15088 417 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ATF6P18850 670 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 UGT1A4P22310 534 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PRKACGP22612 351 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PPP2R1AP30153 589 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CTNNA1P35221 906 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CTNNB1P35222 781 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RFC2P35250 354 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PRKCIP41743 596 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SLC1A1P43005 524 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RAD52P43351 418 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 OR1G1P47890 313 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 GSSP48637 474 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ACADVLP49748 655 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SULT1E1P49888 294 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ASCL1P50553 236 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ARHGDIAP52565 204 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PEX3P56589 373 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NLRP11P59045 1033 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 B3GALT5-AS1P59052 145 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SSTP61278 116 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NAA20P61599 178 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 VSNL1P62760 191 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 DEFB103AP81534 67 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 BEX3Q00994 111 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 GCNT1Q02742 428 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 UBXN1Q04323 297 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ASPHQ12797 758 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TRAP1Q12931 704 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CUL2Q13617 745 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RAPSNQ13702 412 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SNTB1Q13884 538 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 VEZF1Q14119 521 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PTPRCAPQ14761 206 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 FASTKD3Q14CZ7 662 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PPA1Q15181 289 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NPTX1Q15818 432 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SGCAQ16586 387 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CA9Q16790 459 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 UGT3A2Q3SY77 523 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 FUT11Q495W5 492 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 C2CD6Q53TS8 623 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CMPK2Q5EBM0 449 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SLC25A53Q5H9E4 307 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 C9orf152Q5JTZ5 239 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 GARNL3Q5VVW2 1013 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF613Q6PF04 617 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 IYDQ6PHW0 289 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CLEC2AQ6UVW9 174 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 KDELC1Q6UW63 502 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 C6orf89Q6UWU4 347 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 KRT74Q7RTS7 529 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NUP54Q7Z3B4 507 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 DNAJB7Q7Z6W7 309 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CENPVQ7Z7K6 275 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 GLRX5Q86SX6 157 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 IQCHQ86VS3 1027 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SPATA24Q86W54 205 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SLC22A9Q8IVM8 553 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 UNC45BQ8IWX7 931 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MMD2Q8IY49 270 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF595Q8IYB9 648 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ST13P4Q8IZP2 240 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ELMOD1Q8N336 334 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 BBS5Q8N3I7 341 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ALLCQ8N6M5 410 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TC2NQ8N9U0 490 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SLC4A11Q8NBS3 891 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NUP37Q8NFH4 326 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 OR52K2Q8NGK3 314 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 OR10Z1Q8NGY1 313 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 LILRB4Q8NHJ6 448 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 OLIG1Q8TAK6 271 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 FANK1Q8TC84 345 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 FNDC8Q8TC99 324 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 AGR3Q8TD06 166 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ATP8B4Q8TF62 1192 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 GIPC3Q8TF64 312 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RNF139Q8WU17 664 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms