RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-206	ENST00000489142	TRABD2A	Q86V40	505 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	FAM9C	Q8IZT9	166 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	ZNF295-AS1	Q8N0V1	137 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	OR2T11	Q8NH01	316 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	NEIL3	Q8TAT5	605 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	EGLN2	Q96KS0	407 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	GATA5	Q9BWX5	397 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	OSBPL11	Q9BXB4	747 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	IQCG	Q9H095	443 aa	Known RBP	12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	FOLH1B	Q9HBA9	442 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	KLRF1	Q9NZS2	232 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	PRODH2	Q9UF12	536 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142		Q9UFV3	132 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	MAPRE3	Q9UPY8	281 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	EXO1	Q9UQ84	846 aa	Known RBP	12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	C15orf41	Q9Y2V0	281 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	CREBBP	Q92793	2442 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	MYO9A	B2RTY4	2548 aa		12.82	□□□□□ -0.36
VTI1A-206	ENST00000489142	CSMD2	Q7Z408	3487 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	FRG2C	A6NGY1	282 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	C17orf51	A8MQB3	221 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ACOX3	O15254	700 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	SEC22B	O75396	215 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ERN1	O75460	977 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	RSL1D1	O76021	490 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	SNX4	O95219	450 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	CHRNG	P07510	517 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	CT45A8	P0DMV1	189 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	CT45A9	P0DMV2	189 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	CREB1	P16220	341 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	DRD5	P21918	477 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ALDH3A1	P30838	453 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	PTGDS	P41222	190 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	MC3R	P41968	323 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	PPIC	P45877	212 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	RPP38	P78345	283 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ZNF155	Q12901	538 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	CT45A2	Q5DJT8	189 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	WIPI1	Q5MNZ9	446 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	DCST1	Q5T197	706 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ANKRD26P1	Q6NSI1	321 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	NOXRED1	Q6NXP6	359 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	TMEM107	Q6UX40	140 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ZCCHC23	Q6ZST2	131 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ACAD11	Q709F0	780 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	GDF7	Q7Z4P5	450 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	WDR53	Q7Z5U6	358 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	BANP	Q8N9N5	519 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	OR4N2	Q8NGD1	307 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	LILRB4	Q8NHJ6	448 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	AGR3	Q8TD06	166 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	AEN	Q8WTP8	325 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ASB5	Q8WWX0	329 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	HSPBAP1	Q96EW2	488 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	BTBD9	Q96Q07	612 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	UBQLN3	Q9H347	655 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	TUBB1	Q9H4B7	451 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	RUBCNL	Q9H714	662 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	ACKR4	Q9NPB9	350 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	MYNN	Q9NPC7	610 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	MIEF1	Q9NQG6	463 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	RRAGD	Q9NQL2	400 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	SIRT5	Q9NXA8	310 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	QPCTL	Q9NXS2	382 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	GPR55	Q9Y2T6	319 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	CCL27	Q9Y4X3	112 aa		12.81	□□□□□ -0.36
VTI1A-206	ENST00000489142	PRAMEF25	A6NGN4	478 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	MYO1G	B0I1T2	1018 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	AZIN1	O14977	448 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	TRIM13	O60858	407 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	WDR1	O75083	606 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	ICOSLG	O75144	302 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	REM1	O75628	298 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	TOX	O94900	526 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	NUDT17	P0C025	328 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	LINC00032	P0C843	101 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	TCEA1	P23193	301 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	PTPN6	P29350	595 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	MPI	P34949	423 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	PTGER4	P35408	488 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	CDK9	P50750	372 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	DCAF7	P61962	342 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	TFF3	Q07654	80 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	CRYZ	Q08257	329 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	CEBPE	Q15744	281 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	SH2D4B	Q5SQS7	431 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	TIGD3	Q6B0B8	471 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	NUP54	Q7Z3B4	507 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	YRDC	Q86U90	279 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	LIX1L	Q8IVB5	337 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	SLC44A2	Q8IWA5	706 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	ULK2	Q8IYT8	1036 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	CNPY4	Q8N129	248 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	OR1J4	Q8NGS1	313 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	CLHC1	Q8NHS4	586 aa		12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	EFHD2	Q96C19	240 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-206	ENST00000489142	TMEM41A	Q96HV5	264 aa		12.8	□□□□□ -0.36

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