RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 KYAT1Q16773 422 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 TYSND1Q2T9J0 566 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 CCDC14Q49A88 953 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 ZNF789Q5FWF6 425 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 UFSP1Q6NVU6 142 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 ATRAIDQ6UW56 229 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 ASRGL1Q7L266 308 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 KCTD9Q7L273 389 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 MOB1BQ7L9L4 216 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 SLC22A16Q86VW1 577 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 OR8H3Q8N146 312 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 GOT1L1Q8NHS2 421 aaPredicted RBP1.97□□□□□ -2.09
VPS50-216ENST00000484954 FIBINQ8TAL6 211 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 P3H4Q92791 437 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 DNAJA3Q96EY1 480 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 C11orf24Q96F05 449 aaPredicted RBP1.97□□□□□ -2.09
VPS50-216ENST00000484954 DHTKD1Q96HY7 919 aaPredicted RBP1.97□□□□□ -2.09
VPS50-216ENST00000484954 ACCSQ96QU6 501 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 TSSK1BQ9BXA7 367 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 HPS4Q9NQG7 708 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 ARHGAP21Q5T5U3 1957 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 MYO10Q9HD67 2058 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 SMIM30A4D0T7 59 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 KRTAP4-16G5E9R7 235 aaPredicted RBP1.96□□□□□ -2.1
VPS50-216ENST00000484954 PSG2P11465 335 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 ACVR1BP36896 505 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 KRTAP10-10P60014 251 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 YWHAHQ04917 246 aaPredicted RBP1.96□□□□□ -2.1
VPS50-216ENST00000484954 IL18R1Q13478 541 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 PRR4Q16378 134 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 ZNF528Q3MIS6 628 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 GPAT3Q53EU6 434 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 IRGCQ6NXR0 463 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 LINC00696Q6ZRV3 163 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 C9orf40Q8IXQ3 194 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 MCOLN2Q8IZK6 566 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 RNF175Q8N4F7 328 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 OR52J3Q8NH60 311 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 RAB39BQ96DA2 213 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 APOOQ9BUR5 198 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 OSBPL8Q9BZF1 889 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 CCSER1Q9C0I3 900 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 CARD9Q9H257 536 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 MEPEQ9NQ76 525 aaPredicted RBP1.96□□□□□ -2.1
VPS50-216ENST00000484954 ZNF331Q9NQX6 463 aaPredicted RBP1.96□□□□□ -2.1
VPS50-216ENST00000484954 ACOXLQ9NUZ1 547 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 KLK12Q9UKR0 248 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 PDE10AQ9Y233 779 aa1.96□□□□□ -2.1
VPS50-216ENST00000484954 C5orf51A6NDU8 294 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 TCP11X1B4DZS4 312 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 C11orf98E9PRG8 122 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 EI24O14681 340 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 SDC3O75056 442 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 ZNF254O75437 659 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 GHRP10912 638 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 FCARP24071 287 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 CCNE1P24864 410 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 NPRL3Q12980 569 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 SCARB2Q14108 478 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 EBI3Q14213 229 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 SMC1AQ14683 1233 aaKnown RBP1.95□□□□□ -2.1
VPS50-216ENST00000484954 CLPPQ16740 277 aaPredicted RBP1.95□□□□□ -2.1
VPS50-216ENST00000484954 PRR5LQ6MZQ0 368 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 TFAP2EQ6VUC0 442 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 PRSS42Q7Z5A4 293 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 ERICH1Q86X53 443 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 PYROXD2Q8N2H3 581 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 NAT8LQ8N9F0 302 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 OR10H4Q8NGA5 316 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 SRSF12Q8WXF0 261 aaKnown RBP1.95□□□□□ -2.1
VPS50-216ENST00000484954 MARC2Q969Z3 335 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 SPATA17Q96L03 361 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 GPR137Q96N19 417 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 NLNQ9BYT8 704 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 TSPYL1Q9H0U9 437 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 Q9H3A6 140 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 EHD1Q9H4M9 534 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 ABCB8Q9NUT2 735 aa1.95□□□□□ -2.1
VPS50-216ENST00000484954 FOXA2Q9Y261 457 aaPredicted RBP1.95□□□□□ -2.1
VPS50-216ENST00000484954 NPIPA5A0A0B4J1W7 369 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 A0A0J9YVX5 310 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 NPIPA5E9PKD4 350 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 PDLIM1O00151 329 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 EEF2KO00418 725 aaKnown RBP1.94□□□□□ -2.1
VPS50-216ENST00000484954 OR7A17O14581 309 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 ECDO95905 644 aaPredicted RBP1.94□□□□□ -2.1
VPS50-216ENST00000484954 PGK1P00558 417 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 VDRP11473 427 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 GLULP15104 373 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 RPA1P27694 616 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 GPC3P51654 580 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 SNU13P55769 128 aaKnown RBP1.94□□□□□ -2.1
VPS50-216ENST00000484954 PUDPQ08623 228 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 IFI44LQ53G44 452 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 LGSNQ5TDP6 509 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 ZNF57Q68EA5 555 aaPredicted RBP1.94□□□□□ -2.1
VPS50-216ENST00000484954 TRPM8Q7Z2W7 1104 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 TMEM179BQ7Z7N9 219 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 ADAMTS16Q8TE57 1224 aa1.94□□□□□ -2.1
VPS50-216ENST00000484954 ALG9Q9H6U8 611 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms