RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TMCO6Q96DC7 493 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 MS4A6EQ96DS6 147 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 KCNC2Q96PR1 638 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 SNX18Q96RF0 628 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 SLC6A7Q99884 636 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 PITHD1Q9GZP4 211 aaPredicted RBP7.11□□□□□ -1.27
USP54-211ENST00000474929 REXO4Q9GZR2 422 aaKnown RBP7.11□□□□□ -1.27
USP54-211ENST00000474929 DDX47Q9H0S4 455 aaKnown RBP7.11□□□□□ -1.27
USP54-211ENST00000474929 KLHL31Q9H511 634 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 ESM1Q9NQ30 184 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 SLC52A3Q9NQ40 469 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 ACSS1Q9NUB1 689 aaPredicted RBP7.11□□□□□ -1.27
USP54-211ENST00000474929 FBXO34Q9NWN3 711 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 MS4A12Q9NXJ0 267 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 TAS2R16Q9NYV7 291 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 GPRC5BQ9NZH0 403 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 MARCH4Q9P2E8 410 aaPredicted RBP7.11□□□□□ -1.27
USP54-211ENST00000474929 CORO1CQ9ULV4 474 aaPredicted RBP7.11□□□□□ -1.27
USP54-211ENST00000474929 CFL2Q9Y281 166 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 DYRK1BQ9Y463 629 aa7.11□□□□□ -1.27
USP54-211ENST00000474929 NPIPA5A0A0B4J1W7 369 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 LRRC10BA6NIK2 292 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 NPIPA7E9PJI5 369 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 ACOX3O15254 700 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 SPOPO43791 374 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 LILRA1O75019 489 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 LY6HO94772 140 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 SYNGR4O95473 234 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 STAMBPO95630 424 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 ABCB1P08183 1280 aaPredicted RBP7.1□□□□□ -1.27
USP54-211ENST00000474929 NPIPA8P0DM63 369 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 OGNP20774 298 aaKnown RBP7.1□□□□□ -1.27
USP54-211ENST00000474929 CERS1P27544 350 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 AGTR1P30556 359 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 LOXL3P58215 753 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 PSPHP78330 225 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 COL10A1Q03692 680 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 ZNHIT3Q15649 155 aaPredicted RBP7.1□□□□□ -1.27
USP54-211ENST00000474929 STK11Q15831 433 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 KPRPQ5T749 579 aaPredicted RBP7.1□□□□□ -1.27
USP54-211ENST00000474929 SAXO2Q658L1 398 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 E4F1Q66K89 784 aaPredicted RBP7.1□□□□□ -1.27
USP54-211ENST00000474929 ZNF549Q6P9A3 640 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 SASS6Q6UVJ0 657 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 THSD4Q6ZMP0 1018 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 BHLHA15Q7RTS1 189 aaPredicted RBP7.1□□□□□ -1.27
USP54-211ENST00000474929 SLC46A3Q7Z3Q1 461 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 RHOT2Q8IXI1 618 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 WDSUB1Q8N9V3 476 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 OR4K17Q8NGC6 315 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 WFDC12Q8WWY7 111 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 CCT6BQ92526 530 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 NEIL2Q969S2 332 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 FAM136AQ96C01 138 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 NXNL1Q96CM4 212 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 VPS39Q96JC1 886 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 SORCS2Q96PQ0 1159 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 LRRC37BQ96QE4 947 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 GPA33Q99795 319 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 PARVBQ9HBI1 364 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 GP6Q9HCN6 339 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 SMYD2Q9NRG4 433 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP54-211ENST00000474929 PPIAL4AQ9Y536 164 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 AP4B1Q9Y6B7 739 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 RYR2Q92736 4967 aa7.1□□□□□ -1.27
USP54-211ENST00000474929 LRIT2A6NDA9 550 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 SLC22A31A6NKX4 558 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 GOLGA8TH3BQL2 631 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 J3QLI3 93 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 CLEC3AO75596 197 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 AQP8O94778 261 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 SERPING1P05155 500 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 RNASE1P07998 156 aaKnown RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 SKILP12757 684 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 TNNT1P13805 278 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 ANPEPP15144 967 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 TLX1P31314 330 aaPredicted RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 RGS4P49798 205 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 CLCN7P51798 805 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 PLA2G16P53816 162 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 CLDN15P56746 228 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 EIF3EP60228 445 aaKnown RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 PLCXD2Q0VAA5 305 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 ZNF267Q14586 743 aaPredicted RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 BEAN1Q3B7T3 259 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 ADPRMQ3LIE5 342 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 TMEM201Q5SNT2 666 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 C1QTNF12Q5T7M4 302 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 RUSC1-AS1Q66K80 236 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 NXPE4Q6UWF7 544 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 TMPRSS11BQ86T26 416 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 ATG4DQ86TL0 474 aaPredicted RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 KRT78Q8N1N4 520 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 OR52K1Q8NGK4 314 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 OR56A3Q8NH54 315 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 KRT35Q92764 455 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 TANKQ92844 425 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 RIT1Q92963 219 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 ZBTB8AQ96BR9 441 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms