RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ZNF630Q2M218 657 aaPredicted RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 ATXN7L2Q5T6C5 722 aaPredicted RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 C1orf127Q8N9H9 656 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 BSCL2Q96G97 398 aaPredicted RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 BORCS6Q96GS4 357 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 RANBP9Q96S59 729 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 TUBB1Q9H4B7 451 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 ADH5P11766 374 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 PTAFRP25105 342 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 PTBP1P26599 531 aaKnown RBP eCLIP12.67□□□□□ -0.389e-8■■■■■ 26.8
USP40-208ENST00000450966 PPT1P50897 306 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 RTL10Q7L3V2 364 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 RABEPKQ7Z6M1 372 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 GPR149Q86SP6 731 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 DUS3LQ96G46 650 aaKnown RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 SORBS1Q9BX66 1292 aaKnown RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 SH3BGRL2Q9UJC5 107 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 ACSL6Q9UKU0 697 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 FAM230AA0A1W2PPH8 454 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 MFSD11O43934 449 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 ALPLP05186 524 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CSF1P09603 554 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 GDI1P31150 447 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 FAM180BQ6P0A1 224 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 VITQ6UXI7 678 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 GDPD3Q7L5L3 318 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CMIPQ8IY22 773 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 TMEM102Q8N9M5 508 aaPredicted RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 OR4K2Q8NGD2 314 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 SORCS1Q8WY21 1168 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 ACKR4Q9NPB9 350 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CNOT2Q9NZN8 540 aaKnown RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 PCDHB11Q9Y5F2 797 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 EDDM13A0A1B0GTR0 161 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CACNG3O60359 315 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 FGF18O76093 207 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 ITPKAP23677 461 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CPT2P23786 658 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 PTH2RP49190 550 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 ARRB1P49407 418 aaPredicted RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 ZNF41P51814 821 aaPredicted RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 CRISP3P54108 245 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 RPL23AP62750 156 aaKnown RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 EXOSC2Q13868 293 aaKnown RBP12.67□□□□□ -0.38
USP40-208ENST00000450966 EIPR1Q53HC9 387 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CLEC12AQ5QGZ9 265 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 TMPRSS11BQ86T26 416 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 TMEM41AQ96HV5 264 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 SEC22CQ9BRL7 303 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 NOX3Q9HBY0 568 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 RNF11Q9Y3C5 154 aa12.67□□□□□ -0.38
USP40-208ENST00000450966 CD8B2A6NJW9 211 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 ZNF670-ZNF695F2Z2N8 137 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 WNT9AO14904 365 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 CD8BP10966 210 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 KCNC4Q03721 635 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 TLE3Q04726 772 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 TSTD2Q5T7W7 516 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 ZNF776Q68DI1 518 aaPredicted RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 SPRED1Q7Z699 444 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 NRSN1Q8IZ57 195 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 ADGRG5Q8IZF4 528 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 SFXN2Q96NB2 322 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 FAM120CQ9NX05 1096 aaKnown RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 MRPL15Q9P015 296 aaKnown RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 RNF215Q9Y6U7 377 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 TCHHQ07283 1943 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 ZNF878C9JN71 531 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 KIAA0355O15063 1070 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 SIX6O95475 246 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 MAT2AP31153 395 aaKnown RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 WASP42768 502 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 PER3P56645 1201 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 GALNT9Q9HCQ5 603 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 ARGFXA6NJG6 315 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 M0R129 80 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 MED6O75586 246 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 STBD1O95210 358 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 TPOP07202 933 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 HEXBP07686 556 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 UNGP13051 313 aaPredicted RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 ZNF26P17031 533 aaPredicted RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 PFKLP17858 780 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 KHKP50053 298 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 GPR17Q13304 367 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 PLAG1Q6DJT9 500 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 ARL14EPQ8N8R7 260 aaPredicted RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 ZNF709Q8N972 641 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 SLC22A18Q96BI1 424 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 PCED1BQ96HM7 432 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 CCDC74BQ96LY2 380 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 HDHD5Q9BXW7 423 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 FBRSQ9HAH7 460 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 MRPS30Q9NP92 439 aaKnown RBP12.66□□□□□ -0.38
USP40-208ENST00000450966 FAAHO00519 579 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 GABRDO14764 452 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 TPST2O60704 377 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 TAS2R31P59538 309 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 VAMP3Q15836 100 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 PHOSPHO2Q8TCD6 241 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms