RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 MAP4K2Q12851 820 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 CALCOCO2Q13137 446 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 SF3B4Q15427 424 aaKnown RBP eCLIP7.34□□□□□ -1.23
VIM-202ENST00000421459 UAP1Q16222 522 aaPredicted RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 FAM83EQ2M2I3 478 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 TTC19Q6DKK2 380 aaPredicted RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 SLC30A6Q6NXT4 461 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 SLC48A1Q6P1K1 146 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 ZNF474Q6S9Z5 364 aaPredicted RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 TAOK1Q7L7X3 1001 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 NUP54Q7Z3B4 507 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 COMMD6Q7Z4G1 85 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 BTLAQ7Z6A9 289 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 P3H2Q8IVL5 708 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 PTGR2Q8N8N7 351 aaPredicted RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 OR5M1Q8NGP8 315 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 RHEBL1Q8TAI7 183 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 FBXO25Q8TCJ0 367 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 NUDT8Q8WV74 236 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 FIG4Q92562 907 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 ZNF592Q92610 1267 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 KAT2AQ92830 837 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 WNT2BQ93097 391 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 ATP6V1E2Q96A05 226 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 ISL2Q96A47 359 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 TM4SF18Q96CE8 201 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 REPS1Q96D71 796 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 STARD4Q96DR4 205 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 PIK3IP1Q96FE7 263 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 PERPQ96FX8 193 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 ZC3HAV1LQ96H79 300 aaKnown RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 LCORQ96JN0 433 aaPredicted RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 HBEGFQ99075 208 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 SERPINI1Q99574 410 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 SFXN3Q9BWM7 321 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 OR2B2Q9GZK3 357 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 OPN3Q9H1Y3 402 aaPredicted RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 VPS11Q9H270 941 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 RNF14Q9UBS8 474 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 FETUBQ9UGM5 382 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 EIF3LQ9Y262 564 aaKnown RBP7.34□□□□□ -1.23
VIM-202ENST00000421459 TESMINQ9Y4I5 508 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 PCDHA9Q9Y5H5 950 aa7.34□□□□□ -1.23
VIM-202ENST00000421459 ABCA4P78363 2273 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 NINQ8N4C6 2090 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 A0A087X1B8 175 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 A0A096LPK6 155 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 FAM187AA6NFU0 413 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 INAFM1C9JVW0 142 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CTIFO43310 598 aaKnown RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 SMPD2O60906 423 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 REM1O75628 298 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 KLHL2O95198 593 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 PDYNP01213 254 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 ALDOAP04075 364 aaKnown RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 NID1P14543 1247 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CHN1P15882 459 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 NAGAP17050 411 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CCKARP32238 428 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 ALDH9A1P49189 494 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CCNG1P51959 295 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 SUCLG1P53597 346 aaKnown RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 MAPK12P53778 367 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CDH13P55290 713 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 B3GALT5-AS1P59052 145 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 GUCY2DQ02846 1103 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 ILF2Q12905 390 aaKnown RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 TRAF3Q13114 568 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 ACAP2Q15057 778 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 TECRLQ5HYJ1 363 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 TCHHL1Q5QJ38 904 aaPredicted RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 C6orf163Q5TEZ5 329 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 SHEQ5VZ18 495 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 FRG2Q64ET8 278 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 NPSR1Q6W5P4 371 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 YTHDF3Q7Z739 585 aaKnown RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 IFNEQ86WN2 208 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 PLCZ1Q86YW0 608 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 GRAMD2AQ8IUY3 354 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 UBQLNLQ8IYU4 475 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CCDC116Q8IYX3 515 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 METTL4Q8N3J2 472 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CNEP1R1Q8N9A8 125 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 C17orf47Q8NEP4 570 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 SPATA4Q8NEY3 305 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 OR4F6Q8NGB9 312 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 OR4N2Q8NGD1 307 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 PPP1R14CQ8TAE6 165 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 SMPDL3BQ92485 455 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 KLHL29Q96CT2 875 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 CNRIP1Q96F85 164 aaPredicted RBP7.33□□□□□ -1.24
VIM-202ENST00000421459 COX4I2Q96KJ9 171 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 ZNF681Q96N22 645 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 SFXN2Q96NB2 322 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 FAM111AQ96PZ2 611 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 FRG2BQ96QU4 278 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 ADOQ96SZ5 270 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 TM9SF2Q99805 663 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 PSD3Q9NYI0 1048 aa7.33□□□□□ -1.24
VIM-202ENST00000421459 FLRT3Q9NZU0 649 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms