RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PRODH2Q9UF12 536 aa17.45■□□□□ 0.38
SF3A1-202ENST00000411423 CFL2Q9Y281 166 aa17.45■□□□□ 0.38
SF3A1-202ENST00000411423 FAM215AQ9Y5M1 114 aa17.45■□□□□ 0.38
SF3A1-202ENST00000411423 DNAJC13O75165 2243 aa17.45■□□□□ 0.38
SF3A1-202ENST00000411423 TRGV5A0A0B4J1U4 118 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 CAPN14A8MX76 684 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 B4DXG7 233 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 SUSD5O60279 629 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 PLOD3O60568 738 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 BPGMP07738 259 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 FGF4P08620 206 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 SDC1P18827 310 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 MC3RP41968 323 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 KIR3DL1P43629 444 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 MAN2A2P49641 1150 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 TMED10P49755 219 aaKnown RBP17.44■□□□□ 0.38
SF3A1-202ENST00000411423 NCBP2P52298 156 aaKnown RBP eCLIP17.44■□□□□ 0.38
SF3A1-202ENST00000411423 SMSP52788 366 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 NUP107P57740 925 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 PLCXD2Q0VAA5 305 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 KRT71Q3SY84 523 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 TMEM107Q6UX40 140 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 TWIST2Q8WVJ9 160 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 TMBIM1Q969X1 311 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 SDCCAG3Q96C92 435 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 ZNF597Q96LX8 424 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 C3orf30Q96M34 536 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 BBS4Q96RK4 519 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 LDAHQ9H6V9 325 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 BAIAP2L1Q9UHR4 511 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 TRAF6Q9Y4K3 522 aa17.44■□□□□ 0.38
SF3A1-202ENST00000411423 ITPR2Q14571 2701 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 OR14I1A6ND48 311 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 C17orf51A8MQB3 221 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 KDM4EB2RXH2 506 aaPredicted RBP17.43■□□□□ 0.38
SF3A1-202ENST00000411423 GNB5O14775 395 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 PIP5K1BO14986 540 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 ACOX3O15254 700 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 RGS14O43566 566 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 TSPAN2O60636 221 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 HCN1O60741 890 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 CLDN14O95500 239 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 NAGAP17050 411 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 GDF1P27539 372 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 RPL38P63173 70 aaKnown RBP17.43■□□□□ 0.38
SF3A1-202ENST00000411423 TBCELQ5QJ74 424 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 SH2D4BQ5SQS7 431 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 TMEM198Q66K66 360 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 ZNF585AQ6P3V2 769 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 NUP54Q7Z3B4 507 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 WDR53Q7Z5U6 358 aaPredicted RBP17.43■□□□□ 0.38
SF3A1-202ENST00000411423 EXOC3L1Q86VI1 746 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 SLC34A3Q8N130 599 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 CLHC1Q8NHS4 586 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 NEIL3Q8TAT5 605 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 MARVELD3Q96A59 401 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 CIDECQ96AQ7 238 aaPredicted RBP17.43■□□□□ 0.38
SF3A1-202ENST00000411423 ERP27Q96DN0 273 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 TMEM41AQ96HV5 264 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 PKNOX2Q96KN3 472 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 AMDHD1Q96NU7 426 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 TSSK3Q96PN8 268 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 ZNF395Q9H8N7 513 aaPredicted RBP17.43■□□□□ 0.38
SF3A1-202ENST00000411423 ACKR4Q9NPB9 350 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 MIEF1Q9NQG6 463 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 GIMAP4Q9NUV9 329 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 ZDHHC2Q9UIJ5 367 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 RNF6Q9Y252 685 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 C15orf41Q9Y2V0 281 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 CACNA1DQ01668 2161 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 TEX15Q9BXT5 2789 aa17.43■□□□□ 0.38
SF3A1-202ENST00000411423 CENPEQ02224 2701 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 UPK1AO00322 258 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 BCKDKO14874 412 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 ICOSLGO75144 302 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 ERN1O75460 977 aaKnown RBP17.42■□□□□ 0.38
SF3A1-202ENST00000411423 PSMG1O95456 288 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 SNRPB2P08579 225 aaKnown RBP17.42■□□□□ 0.38
SF3A1-202ENST00000411423 PTPN6P29350 595 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 MPIP34949 423 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 DCAF7P61962 342 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 PSG6Q00889 435 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 PMPCAQ10713 525 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 MPP2Q14168 576 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 TNFAIP8L3Q5GJ75 292 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 TMEM81Q6P7N7 255 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 IKBIPQ70UQ0 350 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 ZNF551Q7Z340 670 aaPredicted RBP17.42■□□□□ 0.38
SF3A1-202ENST00000411423 CCDC71Q8IV32 467 aaPredicted RBP17.42■□□□□ 0.38
SF3A1-202ENST00000411423 SAMD14Q8IZD0 417 aaPredicted RBP17.42■□□□□ 0.38
SF3A1-202ENST00000411423 CLYBLQ8N0X4 340 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 NUDT8Q8WV74 236 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 METTL2AQ96IZ6 378 aaKnown RBP17.42■□□□□ 0.38
SF3A1-202ENST00000411423 ZIM3Q96PE6 472 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 QPCTLQ9NXS2 382 aa17.42■□□□□ 0.38
SF3A1-202ENST00000411423 FREM3P0C091 2139 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 PLOD2O00469 737 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 AKAP10O43572 662 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 ITM2AO43736 263 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 LYPLA1O75608 230 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms