RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NDUFA5Q16718 116 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 PAPD4Q6PIY7 484 aaKnown RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 SMARCD3Q6STE5 483 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 HIST3H2AQ7L7L0 130 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 WDR5BQ86VZ2 330 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ZFAND4Q86XD8 727 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ADGRG5Q8IZF4 528 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 OR2T11Q8NH01 316 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 GPBAR1Q8TDU6 330 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 HIST1H2ACQ93077 130 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 L3HYPDHQ96EM0 354 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 COX14Q96I36 57 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 NDEL1Q9GZM8 345 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 CTSFQ9UBX1 484 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 MRTO4Q9UKD2 239 aaKnown RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 SRPK3Q9UPE1 567 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 VDAC3Q9Y277 283 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 PCDHGB3Q9Y5G1 929 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 AP1M2Q9Y6Q5 423 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 NUDT21O43809 227 aaKnown RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 SRPX2O60687 465 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 SERPINA1P01009 418 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 CST1P01037 141 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 SSTR4P31391 388 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 E2F1Q01094 437 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 MAPK11Q15759 364 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 DECR1Q16698 335 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 TTC23Q5W5X9 447 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 TMEM71Q6P5X7 295 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 CCDC81Q6ZN84 652 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 KIAA1958Q8N8K9 716 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 OR56A3Q8NH54 315 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 STT3BQ8TCJ2 826 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 DACH2Q96NX9 599 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 MUS81Q96NY9 551 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 B3GALT1Q9Y5Z6 326 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 NINQ8N4C6 2090 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 GABRR3A8MPY1 467 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 FAM220BPB1ANY3 271 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 H0YAE9 185 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 ATP5A1P25705 553 aaKnown RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 KCNJ5P48544 419 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 DGUOKQ16854 277 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 FLYWCH1Q4VC44 716 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 CYBRD1Q53TN4 286 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 Q6ZSR9 355 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 SAMD14Q8IZD0 417 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 TMEM151AQ8N4L1 468 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 IPCEF1Q8WWN9 437 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 CLDN23Q96B33 292 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 MAPRE3Q9UPY8 281 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 IDSB3KWA1 339 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 SCDO00767 359 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 CLEC3AO75596 197 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 RSL1D1O76021 490 aaKnown RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 PDE9AO76083 593 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 STK17BO94768 372 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 CDH12P55289 794 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 PER3P56645 1201 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 SCARB2Q14108 478 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 DEFB109BQ30KR1 87 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 TMEM35AQ53FP2 167 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 RBM48Q5RL73 367 aaKnown RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 MCEMP1Q8IX19 187 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 WDR36Q8NI36 951 aaKnown RBP9.69□□□□□ -0.86
COL6A3-205ENST00000392004 PIK3R3Q92569 461 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 GAL3ST3Q96A11 431 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 MROQ9BYG7 248 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 LHPPQ9H008 270 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 NANOGQ9H9S0 305 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 PELI2Q9HAT8 420 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 THSD1Q9NS62 852 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 KRT84Q9NSB2 600 aa9.69□□□□□ -0.86
COL6A3-205ENST00000392004 TRBV11-1A0A0K0K1C0 115 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 TARM1B6A8C7 271 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 PLPP1O14494 284 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 RRP8O43159 456 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 THRBP10828 461 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 GSK3BP49841 420 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CDK6Q00534 326 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ZNF311Q5JNZ3 666 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 HSDL2Q6YN16 418 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 P3H2Q8IVL5 708 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ADGRF3Q8IZF5 1079 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 VWA5B2Q8N398 1253 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 GLB1L3Q8NCI6 653 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 GTPBP3Q969Y2 492 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ALPK1Q96QP1 1244 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CHID1Q9BWS9 393 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 QRSL1Q9H0R6 528 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 SLC6A20Q9NP91 592 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 SACM1LQ9NTJ5 587 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 MRPS2Q9Y399 296 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 PTGES3LE9PB15 166 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 TOR1BO14657 336 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CPNE3O75131 537 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 HMGN2P05204 90 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 TPTEP56180 551 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 RPS3AP61247 264 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ENPP2Q13822 863 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms