RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CNOT2Q9NZN8 540 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 MKL2Q9ULH7 1088 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 BRWD1Q9NSI6 2320 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 KIAA1549LQ6ZVL6 1849 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TRBV4-1A0A0J9YWV2 114 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 A0A1W2PPV9 198 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ZAR1LA6NP61 321 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 CACNB4O00305 520 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 AXIN1O15169 862 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ERI3O43414 337 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 LCMT2O60294 686 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 KCNJ5P48544 419 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TAS2R38P59533 333 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TGM3Q08188 693 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 MAMDC2Q7Z304 686 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 SLC46A3Q7Z3Q1 461 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 FAM109AQ8N4B1 249 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 B3GNT7Q8NFL0 401 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 OR2L8Q8NGY9 312 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 WDR36Q8NI36 951 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 RBM18Q96H35 190 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 C6orf62Q9GZU0 229 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 EHD3Q9NZN3 535 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 EMC3Q9P0I2 261 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 CHURC1-FNTBB4DL54 471 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 HMGN4O00479 90 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 LATO43561 262 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 KLF8O95600 359 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 GLAP06280 429 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ADORA3P0DMS8 318 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ZNF3P17036 446 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TEAD1P28347 426 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 CMPK1P30085 196 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 LIMS1P48059 325 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 XKP51811 444 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ABATP80404 500 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 PUM1Q14671 1186 aaKnown RBP eCLIP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 MAPK11Q15759 364 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 Q3ZCU0 254 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TRIM69Q86WT6 500 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 LINC01555Q8NAE3 123 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 PSMA8Q8TAA3 256 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 BBS10Q8TAM1 723 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 SIPA1Q96FS4 1042 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 IL4I1Q96RQ9 567 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 DSN1Q9H410 356 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 SIRT3Q9NTG7 399 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TAS2R7Q9NYW3 318 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 KCND3Q9UK17 655 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 NME6O75414 186 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TBX6O95947 436 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 BMP4P12644 408 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 SOX6P35712 828 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TRIM23P36406 574 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 DGKEP52429 567 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 LIM2P55344 173 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 MLLT1Q03111 559 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TARDBPQ13148 414 aaKnown RBP eCLIP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 SLAMF1Q13291 335 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 LRRC32Q14392 662 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 MLC1Q15049 377 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 SYPL1Q16563 259 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 GPAT3Q53EU6 434 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 ANKRD39Q53RE8 183 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 KIAA1161Q6NSJ0 714 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 GPR32P1Q8NGA4 272 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TREX2Q9BQ50 279 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 CHCHD6Q9BRQ6 235 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TMEM246Q9BRR3 403 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 GLIPR2Q9H4G4 154 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TRIM45Q9H8W5 580 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 FTSJ1Q9UET6 329 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 LRIT2A6NDA9 550 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 ISM1B1AKI9 464 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 M0R082 166 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 PTHP01270 115 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 STATHP02808 62 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 GABRB1P18505 474 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 ELAVL4P26378 380 aaKnown RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 PKLRP30613 574 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 FRKP42685 505 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TOR1AIP1Q5JTV8 583 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 TCTN3Q6NUS6 607 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 NLGN4XQ8N0W4 816 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 LINC00471Q8N535 108 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 OR9Q1Q8NGQ5 310 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 OR2A1Q8NGT9 310 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 KLHL6Q8WZ60 621 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 SGK3Q96BR1 496 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 AMDHD1Q96NU7 426 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 MROQ9BYG7 248 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 SLC6A17Q9H1V8 727 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 CACYBPQ9HB71 228 aaKnown RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 ZBTB20Q9HC78 741 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-204ENST00000392003 FZD3Q9NPG1 666 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 OSGIN1Q9UJX0 560 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 FBXW2Q9UKT8 454 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 KLHL20Q9Y2M5 609 aa9.09□□□□□ -0.95
COL6A3-204ENST00000392003 HEBP2Q9Y5Z4 205 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms