RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TRNT1Q96Q11 434 aaKnown RBP20.23■□□□□ 0.83
TRIM54-202ENST00000380075 OR7D2Q96RA2 312 aa20.23■□□□□ 0.83
TRIM54-202ENST00000380075 POLR2J3Q9H1A7 115 aaKnown RBP20.23■□□□□ 0.83
TRIM54-202ENST00000380075 SYNPO2LQ9H987 977 aa20.23■□□□□ 0.83
TRIM54-202ENST00000380075 KLHL20Q9Y2M5 609 aa20.23■□□□□ 0.83
TRIM54-202ENST00000380075 FAM227AF5H4B4 570 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 PFDN1O60925 122 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 NME6O75414 186 aaPredicted RBP20.22■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF10P21506 573 aaPredicted RBP20.22■□□□□ 0.83
TRIM54-202ENST00000380075 BCKDHBP21953 392 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 POU1F1P28069 291 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 LIPAP38571 399 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 SLC15A1P46059 708 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 CLK1P49759 484 aaKnown RBP20.22■□□□□ 0.83
TRIM54-202ENST00000380075 XKP51811 444 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 SRP54P61011 504 aaKnown RBP20.22■□□□□ 0.83
TRIM54-202ENST00000380075 RELAQ04206 551 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 NR1D2Q14995 579 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 GPAT3Q53EU6 434 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 ATAD3BQ5T9A4 648 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 TMEM236Q5W0B7 351 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 RD3Q7Z3Z2 195 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 FLVCR1-AS1Q8TAF5 88 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 ZHX1-C8orf76Q96EF9 292 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 SPACA7Q96KW9 195 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 SERINC2Q96SA4 455 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 TRIM45Q9H8W5 580 aaPredicted RBP20.22■□□□□ 0.83
TRIM54-202ENST00000380075 AKIP1Q9NQ31 210 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 SELENONQ9NZV5 590 aa20.22■□□□□ 0.83
TRIM54-202ENST00000380075 DUXAA6NLW8 204 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 H0Y8X5 98 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 M0R3H8 397 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 AIREO43918 545 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 RASGRP1O95267 797 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 AGR2O95994 175 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 NCS1P62166 190 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 LSM3P62310 102 aaKnown RBP20.21■□□□□ 0.83
TRIM54-202ENST00000380075 TNFRSF17Q02223 184 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF750Q32MQ0 723 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 PRRT3Q5FWE3 981 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 MEDAGQ5VYS4 303 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 CASP12Q6UXS9 341 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 PRRX2Q99811 253 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 ACTRT3Q9BYD9 372 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 TMEM168Q9H0V1 697 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 SLC25A19Q9HC21 320 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 FAIMQ9NVQ4 179 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 NTMQ9P121 344 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 OSGIN1Q9UJX0 560 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 HS3ST3A1Q9Y663 406 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 RPLP0P05388 317 aaKnown RBP20.21■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF888P0CJ79 500 aaPredicted RBP20.21■□□□□ 0.83
TRIM54-202ENST00000380075 C8orf89P0DMQ9 161 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 MAN2A2P49641 1150 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 TARDBPQ13148 414 aaKnown RBP eCLIP20.21■□□□□ 0.83
TRIM54-202ENST00000380075 PIN1Q13526 163 aaPredicted RBP20.21■□□□□ 0.83
TRIM54-202ENST00000380075 TPRG1LQ5T0D9 272 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 DEFB119Q8N690 84 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 TMCO5AQ8N6Q1 288 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 KCT2Q8NC54 265 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 OR9A2Q8NGT5 310 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 C10orf90Q96M02 699 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 OR2A14Q96R47 310 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 OR2A5Q96R48 311 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 YIPF4Q9BSR8 244 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 GPR174Q9BXC1 333 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 DNAAF2Q9NVR5 837 aaKnown RBP20.21■□□□□ 0.83
TRIM54-202ENST00000380075 GIN1Q9NXP7 522 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 CA5BQ9Y2D0 317 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 KLK4Q9Y5K2 254 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 CORINQ9Y5Q5 1042 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 R4GN57 208 aa20.21■□□□□ 0.83
TRIM54-202ENST00000380075 FAM221BA6H8Z2 402 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 SMIM10L1P0DMW3 83 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 MC3RP41968 323 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 SYT16Q17RD7 645 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 PLAG1Q6DJT9 500 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 FBXO42Q6P3S6 717 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 PODNL1Q6PEZ8 512 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 NLGN4XQ8N0W4 816 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 LRRC25Q8N386 305 aaPredicted RBP20.2■□□□□ 0.82
TRIM54-202ENST00000380075 OR8J1Q8NGP2 316 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 SMIM10Q96HG1 83 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 WFDC6Q9BQY6 131 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 RACGAP1Q9H0H5 632 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 SLC13A4Q9UKG4 626 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 ERGIC3Q9Y282 383 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 ENTPD2Q9Y5L3 495 aa20.2■□□□□ 0.82
TRIM54-202ENST00000380075 GSAPA4D1B5 854 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 H3BN98 237 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 J3QRK9 145 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 CBFA2T3O75081 653 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 SEMA4FO95754 770 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ALPPP05187 535 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ALPPL2P10696 532 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 UGT2B7P16662 529 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 GSTM3P21266 225 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ALDH4A1P30038 563 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 TLX1P31314 330 aaPredicted RBP20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ALG11Q2TAA5 492 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms