RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 WBP2Q969T9 261 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 LYARQ9NX58 379 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 GRHPRQ9UBQ7 328 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 UPB1Q9UBR1 384 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PDCD11Q14690 1871 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 C13orf42A0A1B0GVH6 325 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 OR14I1A6ND48 311 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 DUXAA6NLW8 204 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MEN1O00255 615 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RP2O75695 350 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SULT1C4O75897 302 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CYP17A1P05093 508 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SYN1P17600 705 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PSMA3P25788 255 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 TP53I3Q53FA7 332 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF852Q6ZMS4 543 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RIMKLAQ8IXN7 391 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 LINC00471Q8N535 108 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 OR4K5Q8NGD3 323 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 FIBINQ8TAL6 211 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CDS1Q92903 461 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 IKZF5Q9H5V7 419 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RLIMQ9NVW2 624 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PRELID1Q9Y255 219 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CCL26Q9Y258 94 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MRPS33Q9Y291 106 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 WDR45Q9Y484 360 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PCDHGA6Q9Y5G7 932 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 OR6C74A6NCV1 312 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 EMC8O43402 210 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ARHGEF15O94989 841 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 KCNK5O95279 499 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 C1QAP02745 245 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CHMP24386 653 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RACK1P63244 317 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PAMR1Q6UXH9 720 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 C12orf76Q8N812 135 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 FATE1Q969F0 183 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 NXPE2Q96DL1 559 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ALG8Q9BVK2 526 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF385DQ9H6B1 395 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RNF121Q9H920 327 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SLC25A37Q9NYZ2 338 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MEIS3P1A6NDR6 274 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 L7N2F9 121 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PIM1P11309 404 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MTHFD2P13995 350 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 DRD5P21918 477 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 GDI1P31150 447 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SLC6A6P31641 620 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 EVI2BP34910 448 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 POU6F2P78424 691 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SF3B4Q15427 424 aaKnown RBP eCLIP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MLIPQ5VWP3 458 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 WASH2PQ6VEQ5 465 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ERN2Q76MJ5 926 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 LYSMD2Q8IV50 215 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SLC44A3Q8N4M1 653 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 OR52E2Q8NGJ4 325 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CNN2Q99439 309 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MRTO4Q9UKD2 239 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PLEKHA6Q9Y2H5 1048 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 UGT2A1Q9Y4X1 527 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CACNG2Q9Y698 323 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 I6L893 689 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 NARSO43776 548 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ADAP00813 363 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PRKCDQ05655 676 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 AFMIDQ63HM1 303 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ATCAYQ86WG3 371 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF761Q86XN6 746 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 JAGN1Q8N5M9 183 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 LILRA3Q8N6C8 439 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 DENND6BQ8NEG7 585 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 EFHD2Q96C19 240 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SCRN2Q96FV2 425 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 HSPA12BQ96MM6 686 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 BOLA1Q9Y3E2 137 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 ALG5Q9Y673 324 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 NUMA1Q14980 2115 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 MICAL3Q7RTP6 2002 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 TRAV27A0A087WT01 109 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 FLRT2O43155 660 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RAD1O60671 282 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 PCSK2P16519 638 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 WNT4P56705 351 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 NTHL1P78549 312 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CCSMST1Q4G0I0 132 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 DEFB134Q4QY38 66 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 TMEM69Q5SWH9 247 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RAB12Q6IQ22 244 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 NRARPQ7Z6K4 114 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 OR8J1Q8NGP2 316 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 S100A16Q96FQ6 103 aaKnown RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 RANBP3Q9H6Z4 567 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 SRRDQ9UH36 339 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 CLEC2LP0C7M8 214 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 DDCP20711 480 aa6.2□□□□□ -1.42
SMC1A-202ENST00000375340 AK4P27144 223 aaPredicted RBP6.2□□□□□ -1.42
SMC1A-202ENST00000375340 AQP6Q13520 282 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms