RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RPS13P62277 151 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 RPL38P63173 70 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 MRPS35P82673 323 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 RPA4Q13156 261 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ARHGAP19Q14CB8 494 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TAF11Q15544 211 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SLC5A12Q1EHB4 618 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DUOXA1Q1HG43 343 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 UBE2UQ5VVX9 321 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 C12orf73Q69YU5 71 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CES5AQ6NT32 575 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PRMT9Q6P2P2 845 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TMEM154Q6P9G4 183 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 FAM180AQ6UWF9 173 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SDCCAG8Q86SQ7 713 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 PARGQ86W56 976 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 HEATR4Q86WZ0 1026 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RBM45Q8IUH3 476 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 MICU2Q8IYU8 434 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR10Q1Q8NGQ4 319 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR2L8Q8NGY9 312 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR10A6Q8NH74 314 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CLHC1Q8NHS4 586 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DACT3Q96B18 629 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 CCDC124Q96CT7 223 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZG16BQ96DA0 208 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CXorf40BQ96DE9 158 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NUS1Q96E22 293 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PPM1MQ96MI6 270 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MUS81Q96NY9 551 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 IL17FQ96PD4 163 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DCLRE1CQ96SD1 692 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 CDCA3Q99618 268 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 COPS8Q99627 209 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 EPYCQ99645 322 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CENPKQ9BS16 269 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CHID1Q9BWS9 393 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TOR3AQ9H497 397 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PELI2Q9HAT8 420 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 BCO1Q9HAY6 547 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 LRTM1Q9HBL6 345 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 FGF22Q9HCT0 170 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 AKIP1Q9NQ31 210 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PLCXD1Q9NUJ7 323 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TBC1D29Q9UFV1 150 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CIDEBQ9UHD4 219 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 LEF1Q9UJU2 399 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 PLAGL1Q9UM63 463 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CDC14AQ9UNH5 594 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 STON1Q9Y6Q2 735 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 AP1M2Q9Y6Q5 423 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TTC28Q96AY4 2481 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CACNA1EQ15878 2313 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ABCA7Q8IZY2 2146 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 MGAT4DA6NG13 374 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ZAR1LA6NP61 321 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CACNB4O00305 520 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 SLC28A1O00337 649 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CLOCKO15516 846 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ASNA1O43681 348 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TPST1O60507 370 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SMIM24O75264 130 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SC5DO75845 299 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 KAT7O95251 611 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CNOT4O95628 575 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 GUCA1CO95843 209 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 GASTP01350 101 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 IGKV1D-16P01601 117 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 MT-ND1P03886 318 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CHRM4P08173 479 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 C1GALT1C1LP0DN25 315 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TYRP1P17643 537 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TCN1P20061 433 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 GNPDA1P46926 289 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CDK9P50750 372 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 ATXN3P54252 364 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 PER3P56645 1201 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 EEF1A1P68104 462 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 KLC1Q07866 573 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CD47Q08722 323 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ZNF155Q12901 538 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 STX5Q13190 355 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SRSF5Q13243 272 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 GPM6BQ13491 265 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 RAPSNQ13702 412 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 DAG1Q14118 895 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 KEAP1Q14145 624 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 RAB39AQ14964 217 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 CST6Q15828 149 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SSX1Q16384 188 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SMN1Q16637 294 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 NRF1Q16656 503 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ZNF750Q32MQ0 723 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ANKDD1AQ495B1 522 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ZNF628Q5EBL2 1059 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 STPG1Q5TH74 334 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 GLYATQ6IB77 296 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TCTN3Q6NUS6 607 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 FAM180BQ6P0A1 224 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 BHLHB9Q6PI77 547 aa2.15□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms