RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 POU2F3Q9UKI9 436 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PCDHB14Q9Y5E9 798 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PCDHA9Q9Y5H5 950 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 TAF4O00268 1085 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PCDH17O14917 1159 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PFDN1O60925 122 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CTNSO60931 367 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 SDC1P18827 310 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CBLP22681 906 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 DGCR6Q14129 220 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 RABL3Q5HYI8 236 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PDZK1Q5T2W1 519 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 IL20RBQ6UXL0 311 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PEG10Q86TG7 708 aaKnown RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 CCL4L1Q8NHW4 92 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 TMEM19Q96HH6 336 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 SLC30A3Q99726 388 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PINK1Q9BXM7 581 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PCDHAC1Q9H158 963 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 ACSL6Q9UKU0 697 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CCDC163A0A0D9SF12 145 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CD2P06729 351 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CD1CP29017 333 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CAMK1Q14012 370 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PON3Q15166 354 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 ZNF423Q2M1K9 1284 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PAPD4Q6PIY7 484 aaKnown RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 MVB12AQ96EY5 273 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 NECAB3Q96P71 396 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 CCDC106Q9BWC9 280 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CENPMQ9NSP4 180 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 C11orf98E9PRG8 122 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 RNF144AP50876 292 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 SRSF5Q13243 272 aaKnown RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 KCNAB1Q14722 419 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 DNAJA4Q8WW22 397 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 UCN3Q969E3 161 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CRELD1Q96HD1 420 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 GORASP1Q9BQQ3 440 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 AGPAT4Q9NRZ5 378 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 SERGEFQ9UGK8 458 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 OR6C76A6NM76 312 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 RAD1O60671 282 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 OXSR1O95747 527 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 BCL10O95999 233 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PFN3P60673 137 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 RGNQ15493 299 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 PLK5Q496M5 336 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 IQCCQ4KMZ1 466 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CARD17Q5XLA6 110 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 KRT77Q7Z794 578 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 ZCCHC7Q8N3Z6 543 aaKnown RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 KLHL36Q8N4N3 616 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 CBR4Q8N4T8 237 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 LILRA3Q8N6C8 439 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 SLC46A1Q96NT5 459 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 SPRTNQ9H040 489 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 MKLN1Q9UL63 735 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 ARGFXA6NJG6 315 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 H3BML4 177 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 BCKDHBP21953 392 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 EXOSC7Q15024 291 aaKnown RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 PATE1Q8WXA2 126 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 CDS1Q92903 461 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 ZNF597Q96LX8 424 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 POMT2Q9UKY4 750 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 FARSAQ9Y285 508 aaKnown RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 OR7A17O14581 309 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 PDCD5O14737 125 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 SLC35E2P0CK97 266 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 MEP1AQ16819 746 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 FAM83HQ6ZRV2 1179 aaPredicted RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 GPBAR1Q8TDU6 330 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 C6orf62Q9GZU0 229 aaPredicted RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 LOC100506127A0A0U1RQW1 187 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 PNMA8CA0A1B0GUJ8 204 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 TTLL8A6PVC2 850 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 RHCEP18577 417 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 CAPGP40121 348 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 AGAP7PQ5VUJ5 663 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 TMEM214Q6NUQ4 689 aaKnown RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 SBSNQ6UWP8 590 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 BNIPLQ7Z465 357 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 TSPAN14Q8NG11 270 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 AGAP4Q96P64 663 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 UBQLN4Q9NRR5 601 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 GFYI3L273 518 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 ADORA3P0DMS8 318 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 FOXA1P55317 472 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 HSD17B7P56937 341 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 HMBOX1Q6NT76 420 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 LIX1LQ8IVB5 337 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 ABTB1Q969K4 478 aaPredicted RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 ZNF317Q96PQ6 595 aaPredicted RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 OR5B2Q96R09 309 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 MAGIXQ9H6Y5 334 aa9.56□□□□□ -0.88
USP54-201ENST00000339859 RPH3AQ9Y2J0 694 aaPredicted RBP9.56□□□□□ -0.88
USP54-201ENST00000339859 ARHGEF9O43307 516 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 MED26O95402 600 aa9.55□□□□□ -0.88
USP54-201ENST00000339859 NPPBP16860 134 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms