RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 TGIF2LYQ8IUE0 185 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 RELL1Q8IUW5 271 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 CDYL2Q8N8U2 506 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 C9orf106Q8NAJ2 232 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 SIMC1Q8NDZ2 872 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 MBD3L2Q8NHZ7 208 aaPredicted RBP11.63□□□□□ -0.55
CD44-203ENST00000278386 DCAKDQ8WVC6 231 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 TMBIM1Q969X1 311 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 TM4SF18Q96CE8 201 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 FUT8Q9BYC5 575 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 SENP1Q9P0U3 644 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 DKKL1Q9UK85 242 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 VPS13CQ709C8 3753 aa11.63□□□□□ -0.55
CD44-203ENST00000278386 SETD2Q9BYW2 2564 aaPredicted RBP11.63□□□□□ -0.55
CD44-203ENST00000278386 A0A087WUV0 522 aaPredicted RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 EXOC1LA0A1B0GW35 172 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 GNG14A0A1W2PPG7 69 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 FRG2CA6NGY1 282 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 PCDH7O60245 1069 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 REM1O75628 298 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 SUPT7LO94864 414 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 KRT6AP02538 564 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 KRT6BP04259 564 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 IL3P08700 152 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 TCEA1P23193 301 aaKnown RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 IL12BP29460 328 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 PTGDSP41222 190 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 KRT6CP48668 564 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 TRA2BP62995 288 aaKnown RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 CLCQ05315 142 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 MGAT2Q10469 447 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 CSTF3Q12996 717 aaKnown RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 SNTA1Q13424 505 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 RASA2Q15283 850 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 WHAMMP3Q1A5X7 153 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 ERCC6LQ2NKX8 1250 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 TRMT12Q53H54 448 aaKnown RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 POMZP3Q6PJE2 187 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 ENPP6Q6UWR7 440 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 PAMR1Q6UXH9 720 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 LUZP2Q86TE4 346 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 LINC01560Q8TB33 94 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 EXOSC8Q96B26 276 aaKnown RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 TMCO6Q96DC7 493 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 DTNBP1Q96EV8 351 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 CNRIP1Q96F85 164 aaPredicted RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 TUBA1CQ9BQE3 449 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 YIPF4Q9BSR8 244 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 TMUB1Q9BVT8 246 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 OR2B2Q9GZK3 357 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 CXXC4Q9H2H0 198 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 CALHM2Q9HA72 323 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 GIMAP4Q9NUV9 329 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 VPS29Q9UBQ0 182 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 DMGDHQ9UI17 866 aaKnown RBP11.62□□□□□ -0.55
CD44-203ENST00000278386 ZNF639Q9UID6 485 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 MCM8Q9UJA3 840 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 ZNF180Q9UJW8 692 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 WIF1Q9Y5W5 379 aa11.62□□□□□ -0.55
CD44-203ENST00000278386 MTORP42345 2549 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 FAM221AA4D161 298 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 MANBAO00462 879 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 CBR3O75828 277 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 BCAS2O75934 225 aaPredicted RBP11.61□□□□□ -0.55
CD44-203ENST00000278386 SNRPAP09012 282 aaKnown RBP11.61□□□□□ -0.55
CD44-203ENST00000278386 HSD3B1P14060 373 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 KLK2P20151 261 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 HSD3B2P26439 372 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 SOX18P35713 384 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 PPICP45877 212 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 SLCO1A2P46721 670 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 EMDP50402 254 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 SORDQ00796 357 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ZNF628Q5EBL2 1059 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 GPRIN3Q6ZVF9 776 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 CCDC116Q8IYX3 515 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 GCNT2Q8N0V5 402 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 OR9A2Q8NGT5 310 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 CDC26Q8NHZ8 85 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ZPLD1Q8TCW7 415 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ZNF675Q8TD23 568 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ZNF592Q92610 1267 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 KAT2AQ92830 837 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 CTHRC1Q96CG8 243 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 SFXN2Q96NB2 322 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 COL21A1Q96P44 957 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 TMEM237Q96Q45 408 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ALPK1Q96QP1 1244 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ZNF382Q96SR6 550 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 SFXN3Q9BWM7 321 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 RBM24Q9BX46 236 aaKnown RBP11.61□□□□□ -0.55
CD44-203ENST00000278386 C1QTNF3Q9BXJ4 246 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 EBPLQ9BY08 206 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ANKRA2Q9H9E1 313 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 HEY2Q9UBP5 337 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 ZNF225Q9UK10 706 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 EXO1Q9UQ84 846 aaKnown RBP11.61□□□□□ -0.55
CD44-203ENST00000278386 DLGAP4Q9Y2H0 992 aa11.61□□□□□ -0.55
CD44-203ENST00000278386 OR6C70A6NIJ9 312 aa11.6□□□□□ -0.55
CD44-203ENST00000278386 CLCA1A8K7I4 914 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms