RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 CT45A9P0DMV2 189 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 COX6B1P14854 86 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 DRD5P21918 477 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 PTGDSP41222 190 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 PPICP45877 212 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 MAN2A2P49641 1150 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 CORO7P57737 925 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 NUP107P57740 925 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 ZNF844Q08AG5 666 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 UGT3A2Q3SY77 523 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 CT45A2Q5DJT8 189 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 ARL13AQ5H913 290 aaPredicted RBP13.21□□□□□ -0.29
HMGN3-201ENST00000275036 TBCELQ5QJ74 424 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 NPSR1Q6W5P4 371 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 RNF165Q6ZSG1 346 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 CCDC71Q8IV32 467 aaPredicted RBP13.21□□□□□ -0.29
HMGN3-201ENST00000275036 SAMD14Q8IZD0 417 aaPredicted RBP13.21□□□□□ -0.29
HMGN3-201ENST00000275036 FAM9CQ8IZT9 166 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 OMA1Q96E52 524 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 HSPBAP1Q96EW2 488 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 FCRL1Q96LA6 429 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 ZNF597Q96LX8 424 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 VSTM2LQ96N03 204 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 BBS4Q96RK4 519 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 SECISBP2Q96T21 854 aaKnown RBP13.21□□□□□ -0.29
HMGN3-201ENST00000275036 TRMOQ9BU70 441 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 SLC6A15Q9H2J7 730 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 LDAHQ9H6V9 325 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 LRTM1Q9HBL6 345 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 GIMAP4Q9NUV9 329 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 C1orf109Q9NX04 203 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 TAS2R7Q9NYW3 318 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 PRODH2Q9UF12 536 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 RNF6Q9Y252 685 aa13.21□□□□□ -0.29
HMGN3-201ENST00000275036 AKAP9Q99996 3911 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 TRGV5A0A0B4J1U4 118 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 NKX2-6A6NCS4 301 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 OR14I1A6ND48 311 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 FRG2CA6NGY1 282 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 SLC28A1O00337 649 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 ACOX3O15254 700 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 PLOD3O60568 738 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 HCN1O60741 890 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 UGT2B11O75310 529 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 JUNP05412 331 aaKnown RBP13.2□□□□□ -0.3
HMGN3-201ENST00000275036 FGF4P08620 206 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 LINC00032P0C843 101 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 NAGAP17050 411 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 MPIP34949 423 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 PTGER4P35408 488 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 ETV4P43268 484 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 TRPC1P48995 793 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 DCAF7P61962 342 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 TFF3Q07654 80 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 PLCXD2Q0VAA5 305 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 KRT71Q3SY84 523 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 CES4AQ5XG92 561 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 TMEM198Q66K66 360 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 OR6Y1Q8NGX8 325 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 GFM2Q969S9 779 aaKnown RBP13.2□□□□□ -0.3
HMGN3-201ENST00000275036 ZBTB9Q96C00 473 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 ERP27Q96DN0 273 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 GNRHR2Q96P88 292 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 BTBD9Q96Q07 612 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 TREX2Q9BQ50 279 aaPredicted RBP13.2□□□□□ -0.3
HMGN3-201ENST00000275036 UCK2Q9BZX2 261 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 UBQLN3Q9H347 655 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 GLIPR2Q9H4G4 154 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 FOLH1BQ9HBA9 442 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 ACKR4Q9NPB9 350 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 NPDC1Q9NQX5 325 aaPredicted RBP13.2□□□□□ -0.3
HMGN3-201ENST00000275036 QPCTLQ9NXS2 382 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 RAB21Q9UL25 225 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 POLQO75417 2590 aa13.2□□□□□ -0.3
HMGN3-201ENST00000275036 DOCK7Q96N67 2140 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 C2orf72A6NCS6 295 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 BCKDKO14874 412 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 LSM1O15116 133 aaKnown RBP13.19□□□□□ -0.3
HMGN3-201ENST00000275036 RGS14O43566 566 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 BCAS2O75934 225 aaPredicted RBP13.19□□□□□ -0.3
HMGN3-201ENST00000275036 SNX4O95219 450 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 SDC1P18827 310 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 GDF1P27539 372 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 MC3RP41968 323 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 NCBP2P52298 156 aaKnown RBP eCLIP13.19□□□□□ -0.3
HMGN3-201ENST00000275036 KRTAP10-9P60411 292 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 PMPCAQ10713 525 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 RFTN2Q52LD8 501 aaPredicted RBP13.19□□□□□ -0.3
HMGN3-201ENST00000275036 ZNF385BQ569K4 471 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 ANKRD26P1Q6NSI1 321 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 ZNF585AQ6P3V2 769 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 TMEM81Q6P7N7 255 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 IKBIPQ70UQ0 350 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 NUP54Q7Z3B4 507 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 EID3Q8N140 333 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 NEIL3Q8TAT5 605 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 AGR3Q8TD06 166 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 CA5BP1Q8WTZ4 195 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 TWIST2Q8WVJ9 160 aa13.19□□□□□ -0.3
HMGN3-201ENST00000275036 TMBIM1Q969X1 311 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms